{"sedDocuments":[{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_ACT_A7"},{"status":"SUCCEEDED","id":"data_set_ACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXACT_A7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_GAB"},{"status":"SUCCEEDED","id":"data_set_AUXP_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_B2"},{"status":"SUCCEEDED","id":"data_set_AUX_HWR"},{"status":"SUCCEEDED","id":"data_set_AUX_TDA7"},{"status":"SUCCEEDED","id":"data_set_AUX_TDB2"},{"status":"SUCCEEDED","id":"data_set_C_AGA7"},{"status":"SUCCEEDED","id":"data_set_C_AGA7A7"},{"status":"SUCCEEDED","id":"data_set_C_AGB2"},{"status":"SUCCEEDED","id":"data_set_C_NIC"},{"status":"SUCCEEDED","id":"data_set_C_NIC_NIC"},{"status":"SUCCEEDED","id":"data_set_DES_A7"},{"status":"SUCCEEDED","id":"data_set_DES_B2"},{"status":"SUCCEEDED","id":"data_set_R_DOP"},{"status":"SUCCEEDED","id":"data_set_V_DOP"},{"status":"SUCCEEDED","id":"data_set_V_GAB"}],"duration":0.181338,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.160502,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"150.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"30","key":"njmp"},{"value":"0.005","key":"dt"},{"value":"0.0","key":"t0"}],"algorithm":"KISAO_0000032","duration":0.727358,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n  - The model file `/tmp/tmpz5ajwkk4/Fig2/Fig2B.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - AUXI_GAB is a duplicate name\r\n    - 1 parameters and variables were duplicately defined:\r\n        - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":1.389233,"output":"Archive contains 13 SED-ML documents with 13 models, 13 simulations, 13 tasks, 13 reports, and 13 plots:\r\n  Fig2/Fig2B.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 23 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  Fig3/Fig3B.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 23 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  Fig6/Fig6.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 23 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  FigS4/FigS4-Aleft.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 23 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  FigS4/FigS4-Aright.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 23 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  FigS4/FigS4-Bleft.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 23 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  FigS4/FigS4-Bright.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 23 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  FigS4/FigS4-Cleft.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 23 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  FigS4/FigS4-Cright.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 23 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  FigS4/FigS4-Dleft.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 23 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  FigS4/FigS4-Dright.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 23 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  FigS5/FigS5A.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 27 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  FigS5/FigS5B.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 26 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n\r\nExecuting SED-ML file 1: Fig2/Fig2B.sedml ...\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `Fig2B.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"Fig2/Fig2B.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_ACT_A7"},{"status":"SUCCEEDED","id":"data_set_ACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXACT_A7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_GAB"},{"status":"SUCCEEDED","id":"data_set_AUXP_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_B2"},{"status":"SUCCEEDED","id":"data_set_AUX_HWR"},{"status":"SUCCEEDED","id":"data_set_AUX_TDA7"},{"status":"SUCCEEDED","id":"data_set_AUX_TDB2"},{"status":"SUCCEEDED","id":"data_set_C_AGA7"},{"status":"SUCCEEDED","id":"data_set_C_AGA7A7"},{"status":"SUCCEEDED","id":"data_set_C_AGB2"},{"status":"SUCCEEDED","id":"data_set_C_NIC"},{"status":"SUCCEEDED","id":"data_set_C_NIC_NIC"},{"status":"SUCCEEDED","id":"data_set_DES_A7"},{"status":"SUCCEEDED","id":"data_set_DES_B2"},{"status":"SUCCEEDED","id":"data_set_R_DOP"},{"status":"SUCCEEDED","id":"data_set_V_DOP"},{"status":"SUCCEEDED","id":"data_set_V_GAB"}],"duration":0.158175,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.133606,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"150.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"30","key":"njmp"},{"value":"0.005","key":"dt"},{"value":"0.0","key":"t0"}],"algorithm":"KISAO_0000032","duration":0.713766,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n  - The model file `/tmp/tmpz5ajwkk4/Fig3/Fig3B.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - AUXI_GAB is a duplicate name\r\n    - 1 parameters and variables were duplicately defined:\r\n        - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":1.329592,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 2: Fig3/Fig3B.sedml ...\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `Fig3B.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"Fig3/Fig3B.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_ACT_A7"},{"status":"SUCCEEDED","id":"data_set_ACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXACT_A7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_GAB"},{"status":"SUCCEEDED","id":"data_set_AUXP_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_B2"},{"status":"SUCCEEDED","id":"data_set_AUX_HWR"},{"status":"SUCCEEDED","id":"data_set_AUX_TDA7"},{"status":"SUCCEEDED","id":"data_set_AUX_TDB2"},{"status":"SUCCEEDED","id":"data_set_C_AGA7"},{"status":"SUCCEEDED","id":"data_set_C_AGA7A7"},{"status":"SUCCEEDED","id":"data_set_C_AGB2"},{"status":"SUCCEEDED","id":"data_set_C_NIC"},{"status":"SUCCEEDED","id":"data_set_C_NIC_NIC"},{"status":"SUCCEEDED","id":"data_set_DES_A7"},{"status":"SUCCEEDED","id":"data_set_DES_B2"},{"status":"SUCCEEDED","id":"data_set_R_DOP"},{"status":"SUCCEEDED","id":"data_set_V_DOP"},{"status":"SUCCEEDED","id":"data_set_V_GAB"}],"duration":0.163801,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.129889,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"150.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"150","key":"njmp"},{"value":"0.001","key":"dt"},{"value":"0.0","key":"t0"}],"algorithm":"KISAO_0000032","duration":3.255651,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n  - The model file `/tmp/tmpz5ajwkk4/Fig6/Fig6.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - AUXI_GAB is a duplicate name\r\n    - 1 parameters and variables were duplicately defined:\r\n        - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":3.952746,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 3: Fig6/Fig6.sedml ...\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `Fig6.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"Fig6/Fig6.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_ACT_A7"},{"status":"SUCCEEDED","id":"data_set_ACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXACT_A7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_GAB"},{"status":"SUCCEEDED","id":"data_set_AUXP_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_B2"},{"status":"SUCCEEDED","id":"data_set_AUX_HWR"},{"status":"SUCCEEDED","id":"data_set_AUX_TDA7"},{"status":"SUCCEEDED","id":"data_set_AUX_TDB2"},{"status":"SUCCEEDED","id":"data_set_C_AGA7"},{"status":"SUCCEEDED","id":"data_set_C_AGA7A7"},{"status":"SUCCEEDED","id":"data_set_C_AGB2"},{"status":"SUCCEEDED","id":"data_set_C_NIC"},{"status":"SUCCEEDED","id":"data_set_C_NIC_NIC"},{"status":"SUCCEEDED","id":"data_set_DES_A7"},{"status":"SUCCEEDED","id":"data_set_DES_B2"},{"status":"SUCCEEDED","id":"data_set_R_DOP"},{"status":"SUCCEEDED","id":"data_set_V_DOP"},{"status":"SUCCEEDED","id":"data_set_V_GAB"}],"duration":0.160489,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.134394,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"150.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"30","key":"njmp"},{"value":"0.005","key":"dt"},{"value":"0.0","key":"t0"}],"algorithm":"KISAO_0000032","duration":0.711642,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n  - The model file `/tmp/tmpz5ajwkk4/FigS4/FigS4-Aleft.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - AUXI_GAB is a duplicate name\r\n    - 1 parameters and variables were duplicately defined:\r\n        - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":1.348165,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 4: FigS4/FigS4-Aleft.sedml ...\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Aleft.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"FigS4/FigS4-Aleft.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_ACT_A7"},{"status":"SUCCEEDED","id":"data_set_ACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXACT_A7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_GAB"},{"status":"SUCCEEDED","id":"data_set_AUXP_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_B2"},{"status":"SUCCEEDED","id":"data_set_AUX_HWR"},{"status":"SUCCEEDED","id":"data_set_AUX_TDA7"},{"status":"SUCCEEDED","id":"data_set_AUX_TDB2"},{"status":"SUCCEEDED","id":"data_set_C_AGA7"},{"status":"SUCCEEDED","id":"data_set_C_AGA7A7"},{"status":"SUCCEEDED","id":"data_set_C_AGB2"},{"status":"SUCCEEDED","id":"data_set_C_NIC"},{"status":"SUCCEEDED","id":"data_set_C_NIC_NIC"},{"status":"SUCCEEDED","id":"data_set_DES_A7"},{"status":"SUCCEEDED","id":"data_set_DES_B2"},{"status":"SUCCEEDED","id":"data_set_R_DOP"},{"status":"SUCCEEDED","id":"data_set_V_DOP"},{"status":"SUCCEEDED","id":"data_set_V_GAB"}],"duration":0.166859,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.137764,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"150.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"30","key":"njmp"},{"value":"0.005","key":"dt"},{"value":"0.0","key":"t0"}],"algorithm":"KISAO_0000032","duration":0.665214,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n  - The model file `/tmp/tmpz5ajwkk4/FigS4/FigS4-Aright.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - AUXI_GAB is a duplicate name\r\n    - 1 parameters and variables were duplicately defined:\r\n        - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":1.331915,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 5: FigS4/FigS4-Aright.sedml ...\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Aright.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"FigS4/FigS4-Aright.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_ACT_A7"},{"status":"SUCCEEDED","id":"data_set_ACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXACT_A7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_GAB"},{"status":"SUCCEEDED","id":"data_set_AUXP_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_B2"},{"status":"SUCCEEDED","id":"data_set_AUX_HWR"},{"status":"SUCCEEDED","id":"data_set_AUX_TDA7"},{"status":"SUCCEEDED","id":"data_set_AUX_TDB2"},{"status":"SUCCEEDED","id":"data_set_C_AGA7"},{"status":"SUCCEEDED","id":"data_set_C_AGA7A7"},{"status":"SUCCEEDED","id":"data_set_C_AGB2"},{"status":"SUCCEEDED","id":"data_set_C_NIC"},{"status":"SUCCEEDED","id":"data_set_C_NIC_NIC"},{"status":"SUCCEEDED","id":"data_set_DES_A7"},{"status":"SUCCEEDED","id":"data_set_DES_B2"},{"status":"SUCCEEDED","id":"data_set_R_DOP"},{"status":"SUCCEEDED","id":"data_set_V_DOP"},{"status":"SUCCEEDED","id":"data_set_V_GAB"}],"duration":0.163696,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.140909,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"150.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"30","key":"njmp"},{"value":"0.005","key":"dt"},{"value":"0.0","key":"t0"}],"algorithm":"KISAO_0000032","duration":0.712304,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n  - The model file `/tmp/tmpz5ajwkk4/FigS4/FigS4-Bleft.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - AUXI_GAB is a duplicate name\r\n    - 1 parameters and variables were duplicately defined:\r\n        - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":1.451985,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 6: FigS4/FigS4-Bleft.sedml ...\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Bleft.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"FigS4/FigS4-Bleft.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_ACT_A7"},{"status":"SUCCEEDED","id":"data_set_ACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXACT_A7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_GAB"},{"status":"SUCCEEDED","id":"data_set_AUXP_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_B2"},{"status":"SUCCEEDED","id":"data_set_AUX_HWR"},{"status":"SUCCEEDED","id":"data_set_AUX_TDA7"},{"status":"SUCCEEDED","id":"data_set_AUX_TDB2"},{"status":"SUCCEEDED","id":"data_set_C_AGA7"},{"status":"SUCCEEDED","id":"data_set_C_AGA7A7"},{"status":"SUCCEEDED","id":"data_set_C_AGB2"},{"status":"SUCCEEDED","id":"data_set_C_NIC"},{"status":"SUCCEEDED","id":"data_set_C_NIC_NIC"},{"status":"SUCCEEDED","id":"data_set_DES_A7"},{"status":"SUCCEEDED","id":"data_set_DES_B2"},{"status":"SUCCEEDED","id":"data_set_R_DOP"},{"status":"SUCCEEDED","id":"data_set_V_DOP"},{"status":"SUCCEEDED","id":"data_set_V_GAB"}],"duration":0.169613,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.137424,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"150.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"30","key":"njmp"},{"value":"0.005","key":"dt"},{"value":"0.0","key":"t0"}],"algorithm":"KISAO_0000032","duration":0.661367,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n  - The model file `/tmp/tmpz5ajwkk4/FigS4/FigS4-Bright.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - AUXI_GAB is a duplicate name\r\n    - 1 parameters and variables were duplicately defined:\r\n        - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":1.355193,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 7: FigS4/FigS4-Bright.sedml ...\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Bright.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"FigS4/FigS4-Bright.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_ACT_A7"},{"status":"SUCCEEDED","id":"data_set_ACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXACT_A7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_GAB"},{"status":"SUCCEEDED","id":"data_set_AUXP_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_B2"},{"status":"SUCCEEDED","id":"data_set_AUX_HWR"},{"status":"SUCCEEDED","id":"data_set_AUX_TDA7"},{"status":"SUCCEEDED","id":"data_set_AUX_TDB2"},{"status":"SUCCEEDED","id":"data_set_C_AGA7"},{"status":"SUCCEEDED","id":"data_set_C_AGA7A7"},{"status":"SUCCEEDED","id":"data_set_C_AGB2"},{"status":"SUCCEEDED","id":"data_set_C_NIC"},{"status":"SUCCEEDED","id":"data_set_C_NIC_NIC"},{"status":"SUCCEEDED","id":"data_set_DES_A7"},{"status":"SUCCEEDED","id":"data_set_DES_B2"},{"status":"SUCCEEDED","id":"data_set_R_DOP"},{"status":"SUCCEEDED","id":"data_set_V_DOP"},{"status":"SUCCEEDED","id":"data_set_V_GAB"}],"duration":0.166944,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.139894,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"150.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"30","key":"njmp"},{"value":"0.005","key":"dt"},{"value":"0.0","key":"t0"}],"algorithm":"KISAO_0000032","duration":0.712393,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n  - The model file `/tmp/tmpz5ajwkk4/FigS4/FigS4-Cleft.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - AUXI_GAB is a duplicate name\r\n    - 1 parameters and variables were duplicately defined:\r\n        - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":1.402436,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 8: FigS4/FigS4-Cleft.sedml ...\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Cleft.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"FigS4/FigS4-Cleft.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_ACT_A7"},{"status":"SUCCEEDED","id":"data_set_ACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXACT_A7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_GAB"},{"status":"SUCCEEDED","id":"data_set_AUXP_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_B2"},{"status":"SUCCEEDED","id":"data_set_AUX_HWR"},{"status":"SUCCEEDED","id":"data_set_AUX_TDA7"},{"status":"SUCCEEDED","id":"data_set_AUX_TDB2"},{"status":"SUCCEEDED","id":"data_set_C_AGA7"},{"status":"SUCCEEDED","id":"data_set_C_AGA7A7"},{"status":"SUCCEEDED","id":"data_set_C_AGB2"},{"status":"SUCCEEDED","id":"data_set_C_NIC"},{"status":"SUCCEEDED","id":"data_set_C_NIC_NIC"},{"status":"SUCCEEDED","id":"data_set_DES_A7"},{"status":"SUCCEEDED","id":"data_set_DES_B2"},{"status":"SUCCEEDED","id":"data_set_R_DOP"},{"status":"SUCCEEDED","id":"data_set_V_DOP"},{"status":"SUCCEEDED","id":"data_set_V_GAB"}],"duration":0.167434,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.140742,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"150.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"30","key":"njmp"},{"value":"0.005","key":"dt"},{"value":"0.0","key":"t0"}],"algorithm":"KISAO_0000032","duration":0.662527,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n  - The model file `/tmp/tmpz5ajwkk4/FigS4/FigS4-Cright.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - AUXI_GAB is a duplicate name\r\n    - 1 parameters and variables were duplicately defined:\r\n        - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":1.372084,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 9: FigS4/FigS4-Cright.sedml ...\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Cright.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"FigS4/FigS4-Cright.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_ACT_A7"},{"status":"SUCCEEDED","id":"data_set_ACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXACT_A7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_GAB"},{"status":"SUCCEEDED","id":"data_set_AUXP_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_B2"},{"status":"SUCCEEDED","id":"data_set_AUX_HWR"},{"status":"SUCCEEDED","id":"data_set_AUX_TDA7"},{"status":"SUCCEEDED","id":"data_set_AUX_TDB2"},{"status":"SUCCEEDED","id":"data_set_C_AGA7"},{"status":"SUCCEEDED","id":"data_set_C_AGA7A7"},{"status":"SUCCEEDED","id":"data_set_C_AGB2"},{"status":"SUCCEEDED","id":"data_set_C_NIC"},{"status":"SUCCEEDED","id":"data_set_C_NIC_NIC"},{"status":"SUCCEEDED","id":"data_set_DES_A7"},{"status":"SUCCEEDED","id":"data_set_DES_B2"},{"status":"SUCCEEDED","id":"data_set_R_DOP"},{"status":"SUCCEEDED","id":"data_set_V_DOP"},{"status":"SUCCEEDED","id":"data_set_V_GAB"}],"duration":0.172872,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.142432,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"150.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"30","key":"njmp"},{"value":"0.005","key":"dt"},{"value":"0.0","key":"t0"}],"algorithm":"KISAO_0000032","duration":0.713849,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n  - The model file `/tmp/tmpz5ajwkk4/FigS4/FigS4-Dleft.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - AUXI_GAB is a duplicate name\r\n    - 1 parameters and variables were duplicately defined:\r\n        - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":1.502662,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 10: FigS4/FigS4-Dleft.sedml ...\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Dleft.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"FigS4/FigS4-Dleft.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_ACT_A7"},{"status":"SUCCEEDED","id":"data_set_ACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXACT_A7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_GAB"},{"status":"SUCCEEDED","id":"data_set_AUXP_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_B2"},{"status":"SUCCEEDED","id":"data_set_AUX_HWR"},{"status":"SUCCEEDED","id":"data_set_AUX_TDA7"},{"status":"SUCCEEDED","id":"data_set_AUX_TDB2"},{"status":"SUCCEEDED","id":"data_set_C_AGA7"},{"status":"SUCCEEDED","id":"data_set_C_AGA7A7"},{"status":"SUCCEEDED","id":"data_set_C_AGB2"},{"status":"SUCCEEDED","id":"data_set_C_NIC"},{"status":"SUCCEEDED","id":"data_set_C_NIC_NIC"},{"status":"SUCCEEDED","id":"data_set_DES_A7"},{"status":"SUCCEEDED","id":"data_set_DES_B2"},{"status":"SUCCEEDED","id":"data_set_R_DOP"},{"status":"SUCCEEDED","id":"data_set_V_DOP"},{"status":"SUCCEEDED","id":"data_set_V_GAB"}],"duration":0.168915,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.149409,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"150.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"30","key":"njmp"},{"value":"0.005","key":"dt"},{"value":"0.0","key":"t0"}],"algorithm":"KISAO_0000032","duration":0.660884,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n  - The model file `/tmp/tmpz5ajwkk4/FigS4/FigS4-Dright.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - AUXI_GAB is a duplicate name\r\n    - 1 parameters and variables were duplicately defined:\r\n        - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":1.390091,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 11: FigS4/FigS4-Dright.sedml ...\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Dright.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"FigS4/FigS4-Dright.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_ACT_A7"},{"status":"SUCCEEDED","id":"data_set_ACT_B2"},{"status":"SUCCEEDED","id":"data_set_AINF_ACTA7"},{"status":"SUCCEEDED","id":"data_set_AINF_DESA7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_A7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_GAB"},{"status":"SUCCEEDED","id":"data_set_AUXP_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_B2"},{"status":"SUCCEEDED","id":"data_set_AUX_HWR"},{"status":"SUCCEEDED","id":"data_set_AUX_TDA7"},{"status":"SUCCEEDED","id":"data_set_AUX_TDB2"},{"status":"SUCCEEDED","id":"data_set_C_ACH"},{"status":"SUCCEEDED","id":"data_set_C_AGA7"},{"status":"SUCCEEDED","id":"data_set_C_AGA7A7"},{"status":"SUCCEEDED","id":"data_set_C_AGB2"},{"status":"SUCCEEDED","id":"data_set_C_CHOL"},{"status":"SUCCEEDED","id":"data_set_C_NIC"},{"status":"SUCCEEDED","id":"data_set_C_NIC_NIC"},{"status":"SUCCEEDED","id":"data_set_DES_A7"},{"status":"SUCCEEDED","id":"data_set_DES_B2"},{"status":"SUCCEEDED","id":"data_set_R_DOP"},{"status":"SUCCEEDED","id":"data_set_V_DOP"},{"status":"SUCCEEDED","id":"data_set_V_GAB"}],"duration":0.181975,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.132391,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"700.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"0.005","key":"dt"},{"value":"0.0","key":"t0"},{"value":"140","key":"njmp"}],"algorithm":"KISAO_0000032","duration":3.266056,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n  - The model file `/tmp/tmpz5ajwkk4/FigS5/FigS5A.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - AUXI_GAB is a duplicate name\r\n    - 1 parameters and variables were duplicately defined:\r\n        - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":3.997469,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 12: FigS5/FigS5A.sedml ...\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS5A.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"FigS5/FigS5A.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_ACT_A7"},{"status":"SUCCEEDED","id":"data_set_ACT_B2"},{"status":"SUCCEEDED","id":"data_set_AINF_ACTA7"},{"status":"SUCCEEDED","id":"data_set_AINF_DESA7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_A7"},{"status":"SUCCEEDED","id":"data_set_AUXACT_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_B2"},{"status":"SUCCEEDED","id":"data_set_AUXI_GAB"},{"status":"SUCCEEDED","id":"data_set_AUXP_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_A7"},{"status":"SUCCEEDED","id":"data_set_AUXSEN_B2"},{"status":"SUCCEEDED","id":"data_set_AUX_HWR"},{"status":"SUCCEEDED","id":"data_set_AUX_TDA7"},{"status":"SUCCEEDED","id":"data_set_AUX_TDB2"},{"status":"SUCCEEDED","id":"data_set_C_AGA7"},{"status":"SUCCEEDED","id":"data_set_C_AGA7A7"},{"status":"SUCCEEDED","id":"data_set_C_AGB2"},{"status":"SUCCEEDED","id":"data_set_C_CHOL"},{"status":"SUCCEEDED","id":"data_set_C_NIC"},{"status":"SUCCEEDED","id":"data_set_C_NIC_NIC"},{"status":"SUCCEEDED","id":"data_set_DES_A7"},{"status":"SUCCEEDED","id":"data_set_DES_B2"},{"status":"SUCCEEDED","id":"data_set_R_DOP"},{"status":"SUCCEEDED","id":"data_set_V_DOP"},{"status":"SUCCEEDED","id":"data_set_V_GAB"}],"duration":0.145535,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.135699,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"700.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"200","key":"njmp"},{"value":"0.005","key":"dt"},{"value":"0.0","key":"t0"}],"algorithm":"KISAO_0000032","duration":3.305769,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model` may be invalid.\r\n  - The model file `/tmp/tmpz5ajwkk4/FigS5/FigS5B.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - AUXI_GAB is a duplicate name\r\n    - 1 parameters and variables were duplicately defined:\r\n        - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":4.019556,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 13: FigS5/FigS5B.sedml ...\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS5B.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"FigS5/FigS5B.sedml"}],"duration":28.890078,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    335      0 --:--:-- --:--:-- --:--:--   335\n\r100  363k  100  363k    0     0   675k      0 --:--:-- --:--:-- --:--:--  675k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive has warnings.\r\n  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `Fig2B.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `Fig3B.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `Fig6.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Aleft.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Aright.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Bleft.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Bright.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Cleft.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Cright.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Dleft.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS4-Dright.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS5A.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `FigS5B.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - AUXI_GAB is a duplicate name\r\n      - 1 parameters and variables were duplicately defined:\r\n          - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n  - The SED-ML file at location `Fig2/Fig2B.sedml` has warnings.\r\n    - Model `model` has warnings.\r\n      - The model file `Fig2B.ode` has warnings.\r\n        - The XPP file may be not be formulated correctly\r\n          - AUXI_GAB is a duplicate name\r\n        - 1 parameters and variables were duplicately defined:\r\n            - Initial conditions 'AUXI_GAB'\r\n  - The SED-ML file at location `Fig3/Fig3B.sedml` has warnings.\r\n    - Model `model` has warnings.\r\n      - The model file `Fig3B.ode` has warnings.\r\n        - The XPP file may be not be formulated correctly\r\n          - AUXI_GAB is a duplicate name\r\n        - 1 parameters and variables were duplicately defined:\r\n            - Initial conditions 'AUXI_GAB'\r\n  - The SED-ML file at location `Fig6/Fig6.sedml` has warnings.\r\n    - Model `model` has warnings.\r\n      - The model file `Fig6.ode` has warnings.\r\n        - The XPP file may be not be formulated correctly\r\n          - AUXI_GAB is a duplicate name\r\n        - 1 parameters and variables were duplicately defined:\r\n            - Initial conditions 'AUXI_GAB'\r\n  - The SED-ML file at location `FigS4/FigS4-Aleft.sedml` has warnings.\r\n    - Model `model` has warnings.\r\n      - The model file `FigS4-Aleft.ode` has warnings.\r\n        - The XPP file may be not be formulated correctly\r\n          - AUXI_GAB is a duplicate name\r\n        - 1 parameters and variables were duplicately defined:\r\n            - Initial conditions 'AUXI_GAB'\r\n  - The SED-ML file at location `FigS4/FigS4-Aright.sedml` has warnings.\r\n    - Model `model` has warnings.\r\n      - The model file `FigS4-Aright.ode` has warnings.\r\n        - The XPP file may be not be formulated correctly\r\n          - AUXI_GAB is a duplicate name\r\n        - 1 parameters and variables were duplicately defined:\r\n            - Initial conditions 'AUXI_GAB'\r\n  - The SED-ML file at location `FigS4/FigS4-Bleft.sedml` has warnings.\r\n    - Model `model` has warnings.\r\n      - The model file `FigS4-Bleft.ode` has warnings.\r\n        - The XPP file may be not be formulated correctly\r\n          - AUXI_GAB is a duplicate name\r\n        - 1 parameters and variables were duplicately defined:\r\n            - Initial conditions 'AUXI_GAB'\r\n  - The SED-ML file at location `FigS4/FigS4-Bright.sedml` has warnings.\r\n    - Model `model` has warnings.\r\n      - The model file `FigS4-Bright.ode` has warnings.\r\n        - The XPP file may be not be formulated correctly\r\n          - AUXI_GAB is a duplicate name\r\n        - 1 parameters and variables were duplicately defined:\r\n            - Initial conditions 'AUXI_GAB'\r\n  - The SED-ML file at location `FigS4/FigS4-Cleft.sedml` has warnings.\r\n    - Model `model` has warnings.\r\n      - The model file `FigS4-Cleft.ode` has warnings.\r\n        - The XPP file may be not be formulated correctly\r\n          - AUXI_GAB is a duplicate name\r\n        - 1 parameters and variables were duplicately defined:\r\n            - Initial conditions 'AUXI_GAB'\r\n  - The SED-ML file at location `FigS4/FigS4-Cright.sedml` has warnings.\r\n    - Model `model` has warnings.\r\n      - The model file `FigS4-Cright.ode` has warnings.\r\n        - The XPP file may be not be formulated correctly\r\n          - AUXI_GAB is a duplicate name\r\n        - 1 parameters and variables were duplicately defined:\r\n            - Initial conditions 'AUXI_GAB'\r\n  - The SED-ML file at location `FigS4/FigS4-Dleft.sedml` has warnings.\r\n    - Model `model` has warnings.\r\n      - The model file `FigS4-Dleft.ode` has warnings.\r\n        - The XPP file may be not be formulated correctly\r\n          - AUXI_GAB is a duplicate name\r\n        - 1 parameters and variables were duplicately defined:\r\n            - Initial conditions 'AUXI_GAB'\r\n  - The SED-ML file at location `FigS4/FigS4-Dright.sedml` has warnings.\r\n    - Model `model` has warnings.\r\n      - The model file `FigS4-Dright.ode` has warnings.\r\n        - The XPP file may be not be formulated correctly\r\n          - AUXI_GAB is a duplicate name\r\n        - 1 parameters and variables were duplicately defined:\r\n            - Initial conditions 'AUXI_GAB'\r\n  - The SED-ML file at location `FigS5/FigS5A.sedml` has warnings.\r\n    - Model `model` has warnings.\r\n      - The model file `FigS5A.ode` has warnings.\r\n        - The XPP file may be not be formulated correctly\r\n          - AUXI_GAB is a duplicate name\r\n        - 1 parameters and variables were duplicately defined:\r\n            - Initial conditions 'AUXI_GAB'\r\n  - The SED-ML file at location `FigS5/FigS5B.sedml` has warnings.\r\n    - Model `model` has warnings.\r\n      - The model file `FigS5B.ode` has warnings.\r\n        - The XPP file may be not be formulated correctly\r\n          - AUXI_GAB is a duplicate name\r\n        - 1 parameters and variables were duplicately defined:\r\n            - Initial conditions 'AUXI_GAB'\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 2 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 13 SED documents:\n  SED documents (13):\n    Succeeded: 13\n    Skipped: 0\n    Failed: 0\n  Tasks (13):\n    Succeeded: 13\n    Skipped: 0\n    Failed: 0\n  Outputs (26):\n    Succeeded: 26\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/README         \n  inflating: contents/Fig6/README    \n  inflating: contents/Fig6/Fig6.ode  \n  inflating: contents/Fig3/README    \n  inflating: contents/Fig3/Fig3B.ode  \n  inflating: contents/FigS5/FigS5B.ode  \n  inflating: contents/FigS5/README   \n  inflating: contents/FigS5/FigS5A.ode  \n  inflating: contents/FigS4/FigS4-Dright.ode  \n  inflating: contents/FigS4/FigS4-Cleft.ode  \n  inflating: contents/FigS4/FigS4-Bleft.ode  \n  inflating: contents/FigS4/README   \n  inflating: contents/FigS4/FigS4-Aright.ode  \n  inflating: contents/FigS4/FigS4-Cright.ode  \n  inflating: contents/FigS4/FigS4-Bright.ode  \n  inflating: contents/FigS4/FigS4-Dleft.ode  \n  inflating: contents/FigS4/FigS4-Aleft.ode  \n  inflating: contents/Fig2/Fig2B.ode  \n  inflating: contents/Fig2/README    \n  inflating: contents/Fig2/Fig2B.sedml  \n  inflating: contents/Fig3/Fig3B.sedml  \n  inflating: contents/Fig6/Fig6.sedml  \n  inflating: contents/FigS4/FigS4-Aleft.sedml  \n  inflating: contents/FigS4/FigS4-Aright.sedml  \n  inflating: contents/FigS4/FigS4-Bleft.sedml  \n  inflating: contents/FigS4/FigS4-Bright.sedml  \n  inflating: contents/FigS4/FigS4-Cleft.sedml  \n  inflating: contents/FigS4/FigS4-Cright.sedml  \n  inflating: contents/FigS4/FigS4-Dleft.sedml  \n  inflating: contents/FigS4/FigS4-Dright.sedml  \n  inflating: contents/FigS5/FigS5A.sedml  \n  inflating: contents/FigS5/FigS5B.sedml  \n  inflating: contents/metadata.rdf   \n  inflating: contents/article-figures/PMC4198061/cn-2014-00126t_0002.jpg  \n  inflating: contents/article-figures/PMC4198061/cn-2014-00126t_0003.jpg  \n  inflating: contents/article-figures/PMC4198061/cn-2014-00126t_0004.jpg  \n  inflating: contents/article-figures/PMC4198061/cn-2014-00126t_0005.jpg  \n  inflating: contents/article-figures/PMC4198061/cn-2014-00126t_0006.jpg  \n  inflating: contents/article-figures/PMC4198061/cn-2014-00126t_0007.jpg  \n  inflating: contents/manifest.xml   \nCompleted 14.8 KiB/737.3 KiB (161.8 KiB/s) with 40 file(s) remaining\rupload: contents/Fig2/Fig2B.sedml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/Fig2/Fig2B.sedml\nCompleted 14.8 KiB/737.3 KiB (161.8 KiB/s) with 39 file(s) remaining\rCompleted 15.2 KiB/737.3 KiB (148.2 KiB/s) with 39 file(s) remaining\rupload: contents/Fig2/README to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/Fig2/README\nCompleted 15.2 KiB/737.3 KiB (148.2 KiB/s) with 38 file(s) remaining\rCompleted 23.1 KiB/737.3 KiB (170.4 KiB/s) with 38 file(s) remaining\rupload: contents/Fig2/Fig2B.ode to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/Fig2/Fig2B.ode\nCompleted 23.1 KiB/737.3 KiB (170.4 KiB/s) with 37 file(s) remaining\rCompleted 23.5 KiB/737.3 KiB (151.6 KiB/s) with 37 file(s) remaining\rupload: contents/Fig3/README to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/Fig3/README\nCompleted 23.5 KiB/737.3 KiB (151.6 KiB/s) with 36 file(s) remaining\rCompleted 31.2 KiB/737.3 KiB (183.6 KiB/s) with 36 file(s) remaining\rupload: contents/Fig6/Fig6.ode to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/Fig6/Fig6.ode\nCompleted 31.2 KiB/737.3 KiB (183.6 KiB/s) with 35 file(s) remaining\rCompleted 46.1 KiB/737.3 KiB (259.9 KiB/s) with 35 file(s) remaining\rupload: contents/Fig3/Fig3B.sedml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/Fig3/Fig3B.sedml\nCompleted 46.1 KiB/737.3 KiB (259.9 KiB/s) with 34 file(s) remaining\rCompleted 61.0 KiB/737.3 KiB (332.8 KiB/s) with 34 file(s) remaining\rupload: contents/Fig6/Fig6.sedml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/Fig6/Fig6.sedml\nCompleted 61.0 KiB/737.3 KiB (332.8 KiB/s) with 33 file(s) remaining\rCompleted 75.8 KiB/737.3 KiB (404.5 KiB/s) with 33 file(s) remaining\rupload: contents/FigS4/FigS4-Bleft.sedml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Bleft.sedml\nCompleted 75.8 KiB/737.3 KiB (404.5 KiB/s) with 32 file(s) remaining\rCompleted 83.6 KiB/737.3 KiB (434.6 KiB/s) with 32 file(s) remaining\rupload: contents/FigS4/FigS4-Bright.ode to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Bright.ode\nCompleted 83.6 KiB/737.3 KiB (434.6 KiB/s) with 31 file(s) remaining\rCompleted 84.7 KiB/737.3 KiB (433.5 KiB/s) with 31 file(s) remaining\rupload: contents/Fig6/README to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/Fig6/README\nCompleted 84.7 KiB/737.3 KiB (433.5 KiB/s) with 30 file(s) remaining\rCompleted 99.6 KiB/737.3 KiB (500.5 KiB/s) with 30 file(s) remaining\rupload: contents/FigS4/FigS4-Bright.sedml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Bright.sedml\nCompleted 99.6 KiB/737.3 KiB (500.5 KiB/s) with 29 file(s) remaining\rCompleted 107.8 KiB/737.3 KiB (537.6 KiB/s) with 29 file(s) remaining\rupload: contents/Fig3/Fig3B.ode to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/Fig3/Fig3B.ode\nCompleted 107.8 KiB/737.3 KiB (537.6 KiB/s) with 28 file(s) remaining\rCompleted 115.7 KiB/737.3 KiB (546.3 KiB/s) with 28 file(s) remaining\rupload: contents/FigS4/FigS4-Aleft.ode to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Aleft.ode\nCompleted 115.7 KiB/737.3 KiB (546.3 KiB/s) with 27 file(s) remaining\rCompleted 123.5 KiB/737.3 KiB (518.8 KiB/s) with 27 file(s) remaining\rCompleted 131.4 KiB/737.3 KiB (547.6 KiB/s) with 27 file(s) remaining\rupload: contents/FigS4/FigS4-Cright.ode to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Cright.ode\nCompleted 131.4 KiB/737.3 KiB (547.6 KiB/s) with 26 file(s) remaining\rupload: contents/FigS4/FigS4-Cleft.ode to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Cleft.ode\nCompleted 131.4 KiB/737.3 KiB (547.6 KiB/s) with 25 file(s) remaining\rCompleted 139.6 KiB/737.3 KiB (565.7 KiB/s) with 25 file(s) remaining\rupload: contents/FigS4/FigS4-Dleft.ode to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Dleft.ode\nCompleted 139.6 KiB/737.3 KiB (565.7 KiB/s) with 24 file(s) remaining\rCompleted 154.4 KiB/737.3 KiB (620.5 KiB/s) with 24 file(s) remaining\rCompleted 169.3 KiB/737.3 KiB (666.9 KiB/s) with 24 file(s) remaining\rupload: contents/FigS4/FigS4-Dright.sedml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Dright.sedml\nCompleted 169.3 KiB/737.3 KiB (666.9 KiB/s) with 23 file(s) remaining\rupload: contents/FigS4/FigS4-Cright.sedml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Cright.sedml\nCompleted 169.3 KiB/737.3 KiB (666.9 KiB/s) with 22 file(s) remaining\rCompleted 170.6 KiB/737.3 KiB (657.5 KiB/s) with 22 file(s) remaining\rupload: contents/FigS4/README to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/README\nCompleted 170.6 KiB/737.3 KiB (657.5 KiB/s) with 21 file(s) remaining\rCompleted 185.5 KiB/737.3 KiB (701.7 KiB/s) with 21 file(s) remaining\rupload: contents/FigS4/FigS4-Dleft.sedml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Dleft.sedml\nCompleted 185.5 KiB/737.3 KiB (701.7 KiB/s) with 20 file(s) remaining\rCompleted 193.8 KiB/737.3 KiB (726.3 KiB/s) with 20 file(s) remaining\rupload: contents/FigS4/FigS4-Dright.ode to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Dright.ode\nCompleted 193.8 KiB/737.3 KiB (726.3 KiB/s) with 19 file(s) remaining\rCompleted 208.6 KiB/737.3 KiB (775.2 KiB/s) with 19 file(s) remaining\rupload: contents/FigS4/FigS4-Cleft.sedml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Cleft.sedml\nCompleted 208.6 KiB/737.3 KiB (775.2 KiB/s) with 18 file(s) remaining\rCompleted 223.5 KiB/737.3 KiB (817.7 KiB/s) with 18 file(s) remaining\rupload: contents/FigS4/FigS4-Aleft.sedml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Aleft.sedml\nCompleted 223.5 KiB/737.3 KiB (817.7 KiB/s) with 17 file(s) remaining\rCompleted 225.2 KiB/737.3 KiB (715.1 KiB/s) with 17 file(s) remaining\rupload: contents/FigS5/README to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS5/README\nCompleted 225.2 KiB/737.3 KiB (715.1 KiB/s) with 16 file(s) remaining\rCompleted 240.0 KiB/737.3 KiB (738.6 KiB/s) with 16 file(s) remaining\rCompleted 247.9 KiB/737.3 KiB (758.1 KiB/s) with 16 file(s) remaining\rupload: contents/FigS4/FigS4-Bleft.ode to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Bleft.ode\nCompleted 247.9 KiB/737.3 KiB (758.1 KiB/s) with 15 file(s) remaining\rCompleted 249.7 KiB/737.3 KiB (753.8 KiB/s) with 15 file(s) remaining\rupload: contents/README to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/README\nCompleted 249.7 KiB/737.3 KiB (753.8 KiB/s) with 14 file(s) remaining\rCompleted 266.3 KiB/737.3 KiB (797.0 KiB/s) with 14 file(s) remaining\rupload: contents/FigS5/FigS5B.sedml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS5/FigS5B.sedml\nCompleted 266.3 KiB/737.3 KiB (797.0 KiB/s) with 13 file(s) remaining\rCompleted 274.2 KiB/737.3 KiB (811.8 KiB/s) with 13 file(s) remaining\rupload: contents/FigS4/FigS4-Aright.ode to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Aright.ode\nCompleted 274.2 KiB/737.3 KiB (811.8 KiB/s) with 12 file(s) remaining\rupload: contents/FigS4/FigS4-Aright.sedml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS4/FigS4-Aright.sedml\nCompleted 274.2 KiB/737.3 KiB (811.8 KiB/s) with 11 file(s) remaining\rCompleted 291.3 KiB/737.3 KiB (837.9 KiB/s) with 11 file(s) remaining\rupload: contents/FigS5/FigS5A.sedml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS5/FigS5A.sedml\nCompleted 291.3 KiB/737.3 KiB (837.9 KiB/s) with 10 file(s) remaining\rCompleted 301.2 KiB/737.3 KiB (862.6 KiB/s) with 10 file(s) remaining\rupload: contents/FigS5/FigS5B.ode to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS5/FigS5B.ode\nCompleted 301.2 KiB/737.3 KiB (862.6 KiB/s) with 9 file(s) remaining\rCompleted 355.5 KiB/737.3 KiB (999.3 KiB/s) with 9 file(s) remaining\rupload: contents/article-figures/PMC4198061/cn-2014-00126t_0002.jpg to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/article-figures/PMC4198061/cn-2014-00126t_0002.jpg\nCompleted 355.5 KiB/737.3 KiB (999.3 KiB/s) with 8 file(s) remaining\rCompleted 365.2 KiB/737.3 KiB (976.4 KiB/s) with 8 file(s) remaining\rupload: contents/FigS5/FigS5A.ode to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/FigS5/FigS5A.ode\nCompleted 365.2 KiB/737.3 KiB (976.4 KiB/s) with 7 file(s) remaining\rCompleted 369.9 KiB/737.3 KiB (927.7 KiB/s) with 7 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/manifest.xml\nCompleted 369.9 KiB/737.3 KiB (927.7 KiB/s) with 6 file(s) remaining\rCompleted 433.9 KiB/737.3 KiB (1.0 MiB/s) with 6 file(s) remaining  \rupload: contents/article-figures/PMC4198061/cn-2014-00126t_0005.jpg to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/article-figures/PMC4198061/cn-2014-00126t_0005.jpg\nCompleted 433.9 KiB/737.3 KiB (1.0 MiB/s) with 5 file(s) remaining\rCompleted 485.3 KiB/737.3 KiB (1.1 MiB/s) with 5 file(s) remaining\rupload: contents/article-figures/PMC4198061/cn-2014-00126t_0007.jpg to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/article-figures/PMC4198061/cn-2014-00126t_0007.jpg\nCompleted 485.3 KiB/737.3 KiB (1.1 MiB/s) with 4 file(s) remaining\rCompleted 547.6 KiB/737.3 KiB (1.3 MiB/s) with 4 file(s) remaining\rCompleted 562.9 KiB/737.3 KiB (1.3 MiB/s) with 4 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/metadata.rdf\nCompleted 562.9 KiB/737.3 KiB (1.3 MiB/s) with 3 file(s) remaining\rupload: contents/article-figures/PMC4198061/cn-2014-00126t_0003.jpg to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/article-figures/PMC4198061/cn-2014-00126t_0003.jpg\nCompleted 562.9 KiB/737.3 KiB (1.3 MiB/s) with 2 file(s) remaining\rCompleted 678.3 KiB/737.3 KiB (1.5 MiB/s) with 2 file(s) remaining\rupload: contents/article-figures/PMC4198061/cn-2014-00126t_0006.jpg to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/article-figures/PMC4198061/cn-2014-00126t_0006.jpg\nCompleted 678.3 KiB/737.3 KiB (1.5 MiB/s) with 1 file(s) remaining\rCompleted 737.3 KiB/737.3 KiB (1.5 MiB/s) with 1 file(s) remaining\rupload: contents/article-figures/PMC4198061/cn-2014-00126t_0004.jpg to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/contents/article-figures/PMC4198061/cn-2014-00126t_0004.jpg\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /Fig2\ncreating group /Fig2/Fig2B.sedml\ncreating dataset /Fig2/Fig2B.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-c48c-7dda79-c3df4d, chunk_size: (2, 1001)\ncreating dataset /Fig2/Fig2B.sedml/report, shape: (23, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-0d77-5dbec6-b24cea, chunk_size: (23, 1001)\ncreating group /Fig3\ncreating group /Fig3/Fig3B.sedml\ncreating dataset /Fig3/Fig3B.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-93fd-081e4a-bfa464, chunk_size: (2, 1001)\ncreating dataset /Fig3/Fig3B.sedml/report, shape: (23, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-6935-b4a451-638e7d, chunk_size: (23, 1001)\ncreating group /Fig6\ncreating group /Fig6/Fig6.sedml\ncreating dataset /Fig6/Fig6.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-656f-fae1fe-8bfb01, chunk_size: (2, 1001)\ncreating dataset /Fig6/Fig6.sedml/report, shape: (23, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-5412-c48e5c-61da35, chunk_size: (23, 1001)\ncreating group /FigS4\ncreating group /FigS4/FigS4-Aleft.sedml\ncreating dataset /FigS4/FigS4-Aleft.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-6854-45d0f3-f235e3, chunk_size: (2, 1001)\ncreating dataset /FigS4/FigS4-Aleft.sedml/report, shape: (23, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-914b-f7bb66-3c468c, chunk_size: (23, 1001)\ncreating group /FigS4/FigS4-Aright.sedml\ncreating dataset /FigS4/FigS4-Aright.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-5948-bb1e42-29a987, chunk_size: (2, 1001)\ncreating dataset /FigS4/FigS4-Aright.sedml/report, shape: (23, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-62bc-f188ca-69a1bc, chunk_size: (23, 1001)\ncreating group /FigS4/FigS4-Bleft.sedml\ncreating dataset /FigS4/FigS4-Bleft.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-c699-9e48cb-13bdfc, chunk_size: (2, 1001)\ncreating dataset /FigS4/FigS4-Bleft.sedml/report, shape: (23, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-009c-08a521-4de0c9, chunk_size: (23, 1001)\ncreating group /FigS4/FigS4-Bright.sedml\ncreating dataset /FigS4/FigS4-Bright.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-78b2-45db92-fb71cd, chunk_size: (2, 1001)\ncreating dataset /FigS4/FigS4-Bright.sedml/report, shape: (23, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-c7e3-f539b0-1f170f, chunk_size: (23, 1001)\ncreating group /FigS4/FigS4-Cleft.sedml\ncreating dataset /FigS4/FigS4-Cleft.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-38ba-20305a-a99120, chunk_size: (2, 1001)\ncreating dataset /FigS4/FigS4-Cleft.sedml/report, shape: (23, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-da13-9df12b-1c60a0, chunk_size: (23, 1001)\ncreating group /FigS4/FigS4-Cright.sedml\ncreating dataset /FigS4/FigS4-Cright.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-a33d-7f1456-e1304a, chunk_size: (2, 1001)\ncreating dataset /FigS4/FigS4-Cright.sedml/report, shape: (23, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-87f3-7cb6c6-cf7dba, chunk_size: (23, 1001)\ncreating group /FigS4/FigS4-Dleft.sedml\ncreating dataset /FigS4/FigS4-Dleft.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-1660-10d0fa-8f831c, chunk_size: (2, 1001)\ncreating dataset /FigS4/FigS4-Dleft.sedml/report, shape: (23, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-6346-7c6d60-c70ce3, chunk_size: (23, 1001)\ncreating group /FigS4/FigS4-Dright.sedml\ncreating dataset /FigS4/FigS4-Dright.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-b6f4-726ebc-02b972, chunk_size: (2, 1001)\ncreating dataset /FigS4/FigS4-Dright.sedml/report, shape: (23, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-2b09-41cd24-acb60d, chunk_size: (23, 1001)\ncreating group /FigS5\ncreating group /FigS5/FigS5A.sedml\ncreating dataset /FigS5/FigS5A.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-ec8e-c9d0e5-03df2d, chunk_size: (2, 1001)\ncreating dataset /FigS5/FigS5A.sedml/report, shape: (27, 1001), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-6e3b-b87f6b-bede79, chunk_size: (27, 1001)\ncreating group /FigS5/FigS5B.sedml\ncreating dataset /FigS5/FigS5B.sedml/plot, shape: (2, 701), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-e396-269be7-935760, chunk_size: (2, 701)\ncreating dataset /FigS5/FigS5B.sedml/report, shape: (26, 701), type: float64\ndataset created, uuid: d-c175e5d6-96344fa2-67ec-1c284e-521699, chunk_size: (26, 701)\ncreating attribute combineArchiveLocation in /Fig2\ncreating attribute uri in /Fig2\ncreating attribute combineArchiveLocation in /Fig2/Fig2B.sedml\ncreating attribute uri in /Fig2/Fig2B.sedml\ncreating attribute _type in /Fig2/Fig2B.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /Fig2/Fig2B.sedml/plot\ncreating attribute sedmlDataSetIds in /Fig2/Fig2B.sedml/plot\ncreating attribute sedmlDataSetLabels in /Fig2/Fig2B.sedml/plot\ncreating attribute sedmlDataSetNames in /Fig2/Fig2B.sedml/plot\ncreating attribute sedmlDataSetShapes in /Fig2/Fig2B.sedml/plot\ncreating attribute sedmlId in /Fig2/Fig2B.sedml/plot\ncreating attribute uri in /Fig2/Fig2B.sedml/plot\ncreating attribute _type in /Fig2/Fig2B.sedml/report\ncreating attribute sedmlDataSetDataTypes in /Fig2/Fig2B.sedml/report\ncreating attribute sedmlDataSetIds in /Fig2/Fig2B.sedml/report\ncreating attribute sedmlDataSetLabels in /Fig2/Fig2B.sedml/report\ncreating attribute sedmlDataSetNames in /Fig2/Fig2B.sedml/report\ncreating attribute sedmlDataSetShapes in /Fig2/Fig2B.sedml/report\ncreating attribute sedmlId in /Fig2/Fig2B.sedml/report\ncreating attribute sedmlName in /Fig2/Fig2B.sedml/report\ncreating attribute uri in /Fig2/Fig2B.sedml/report\ncreating attribute combineArchiveLocation in /Fig3\ncreating attribute uri in /Fig3\ncreating attribute combineArchiveLocation in /Fig3/Fig3B.sedml\ncreating attribute uri in /Fig3/Fig3B.sedml\ncreating attribute _type in /Fig3/Fig3B.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /Fig3/Fig3B.sedml/plot\ncreating attribute sedmlDataSetIds in /Fig3/Fig3B.sedml/plot\ncreating attribute sedmlDataSetLabels in /Fig3/Fig3B.sedml/plot\ncreating attribute sedmlDataSetNames in /Fig3/Fig3B.sedml/plot\ncreating attribute sedmlDataSetShapes in /Fig3/Fig3B.sedml/plot\ncreating attribute sedmlId in /Fig3/Fig3B.sedml/plot\ncreating attribute uri in /Fig3/Fig3B.sedml/plot\ncreating attribute _type in /Fig3/Fig3B.sedml/report\ncreating attribute sedmlDataSetDataTypes in /Fig3/Fig3B.sedml/report\ncreating attribute sedmlDataSetIds in /Fig3/Fig3B.sedml/report\ncreating attribute sedmlDataSetLabels in /Fig3/Fig3B.sedml/report\ncreating attribute sedmlDataSetNames in /Fig3/Fig3B.sedml/report\ncreating attribute sedmlDataSetShapes in /Fig3/Fig3B.sedml/report\ncreating attribute sedmlId in /Fig3/Fig3B.sedml/report\ncreating attribute sedmlName in /Fig3/Fig3B.sedml/report\ncreating attribute uri in /Fig3/Fig3B.sedml/report\ncreating attribute combineArchiveLocation in /Fig6\ncreating attribute uri in /Fig6\ncreating attribute combineArchiveLocation in /Fig6/Fig6.sedml\ncreating attribute uri in /Fig6/Fig6.sedml\ncreating attribute _type in /Fig6/Fig6.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /Fig6/Fig6.sedml/plot\ncreating attribute sedmlDataSetIds in /Fig6/Fig6.sedml/plot\ncreating attribute sedmlDataSetLabels in /Fig6/Fig6.sedml/plot\ncreating attribute sedmlDataSetNames in /Fig6/Fig6.sedml/plot\ncreating attribute sedmlDataSetShapes in /Fig6/Fig6.sedml/plot\ncreating attribute sedmlId in /Fig6/Fig6.sedml/plot\ncreating attribute uri in /Fig6/Fig6.sedml/plot\ncreating attribute _type in /Fig6/Fig6.sedml/report\ncreating attribute sedmlDataSetDataTypes in /Fig6/Fig6.sedml/report\ncreating attribute sedmlDataSetIds in /Fig6/Fig6.sedml/report\ncreating attribute sedmlDataSetLabels in /Fig6/Fig6.sedml/report\ncreating attribute sedmlDataSetNames in /Fig6/Fig6.sedml/report\ncreating attribute sedmlDataSetShapes in /Fig6/Fig6.sedml/report\ncreating attribute sedmlId in /Fig6/Fig6.sedml/report\ncreating attribute sedmlName in /Fig6/Fig6.sedml/report\ncreating attribute uri in /Fig6/Fig6.sedml/report\ncreating attribute combineArchiveLocation in /FigS4\ncreating attribute uri in /FigS4\ncreating attribute combineArchiveLocation in /FigS4/FigS4-Aleft.sedml\ncreating attribute uri in /FigS4/FigS4-Aleft.sedml\ncreating attribute _type in /FigS4/FigS4-Aleft.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Aleft.sedml/plot\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Aleft.sedml/plot\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Aleft.sedml/plot\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Aleft.sedml/plot\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Aleft.sedml/plot\ncreating attribute sedmlId in /FigS4/FigS4-Aleft.sedml/plot\ncreating attribute uri in /FigS4/FigS4-Aleft.sedml/plot\ncreating attribute _type in /FigS4/FigS4-Aleft.sedml/report\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Aleft.sedml/report\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Aleft.sedml/report\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Aleft.sedml/report\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Aleft.sedml/report\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Aleft.sedml/report\ncreating attribute sedmlId in /FigS4/FigS4-Aleft.sedml/report\ncreating attribute sedmlName in /FigS4/FigS4-Aleft.sedml/report\ncreating attribute uri in /FigS4/FigS4-Aleft.sedml/report\ncreating attribute combineArchiveLocation in /FigS4/FigS4-Aright.sedml\ncreating attribute uri in /FigS4/FigS4-Aright.sedml\ncreating attribute _type in /FigS4/FigS4-Aright.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Aright.sedml/plot\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Aright.sedml/plot\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Aright.sedml/plot\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Aright.sedml/plot\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Aright.sedml/plot\ncreating attribute sedmlId in /FigS4/FigS4-Aright.sedml/plot\ncreating attribute uri in /FigS4/FigS4-Aright.sedml/plot\ncreating attribute _type in /FigS4/FigS4-Aright.sedml/report\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Aright.sedml/report\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Aright.sedml/report\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Aright.sedml/report\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Aright.sedml/report\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Aright.sedml/report\ncreating attribute sedmlId in /FigS4/FigS4-Aright.sedml/report\ncreating attribute sedmlName in /FigS4/FigS4-Aright.sedml/report\ncreating attribute uri in /FigS4/FigS4-Aright.sedml/report\ncreating attribute combineArchiveLocation in /FigS4/FigS4-Bleft.sedml\ncreating attribute uri in /FigS4/FigS4-Bleft.sedml\ncreating attribute _type in /FigS4/FigS4-Bleft.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Bleft.sedml/plot\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Bleft.sedml/plot\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Bleft.sedml/plot\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Bleft.sedml/plot\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Bleft.sedml/plot\ncreating attribute sedmlId in /FigS4/FigS4-Bleft.sedml/plot\ncreating attribute uri in /FigS4/FigS4-Bleft.sedml/plot\ncreating attribute _type in /FigS4/FigS4-Bleft.sedml/report\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Bleft.sedml/report\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Bleft.sedml/report\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Bleft.sedml/report\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Bleft.sedml/report\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Bleft.sedml/report\ncreating attribute sedmlId in /FigS4/FigS4-Bleft.sedml/report\ncreating attribute sedmlName in /FigS4/FigS4-Bleft.sedml/report\ncreating attribute uri in /FigS4/FigS4-Bleft.sedml/report\ncreating attribute combineArchiveLocation in /FigS4/FigS4-Bright.sedml\ncreating attribute uri in /FigS4/FigS4-Bright.sedml\ncreating attribute _type in /FigS4/FigS4-Bright.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Bright.sedml/plot\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Bright.sedml/plot\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Bright.sedml/plot\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Bright.sedml/plot\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Bright.sedml/plot\ncreating attribute sedmlId in /FigS4/FigS4-Bright.sedml/plot\ncreating attribute uri in /FigS4/FigS4-Bright.sedml/plot\ncreating attribute _type in /FigS4/FigS4-Bright.sedml/report\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Bright.sedml/report\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Bright.sedml/report\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Bright.sedml/report\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Bright.sedml/report\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Bright.sedml/report\ncreating attribute sedmlId in /FigS4/FigS4-Bright.sedml/report\ncreating attribute sedmlName in /FigS4/FigS4-Bright.sedml/report\ncreating attribute uri in /FigS4/FigS4-Bright.sedml/report\ncreating attribute combineArchiveLocation in /FigS4/FigS4-Cleft.sedml\ncreating attribute uri in /FigS4/FigS4-Cleft.sedml\ncreating attribute _type in /FigS4/FigS4-Cleft.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Cleft.sedml/plot\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Cleft.sedml/plot\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Cleft.sedml/plot\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Cleft.sedml/plot\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Cleft.sedml/plot\ncreating attribute sedmlId in /FigS4/FigS4-Cleft.sedml/plot\ncreating attribute uri in /FigS4/FigS4-Cleft.sedml/plot\ncreating attribute _type in /FigS4/FigS4-Cleft.sedml/report\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Cleft.sedml/report\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Cleft.sedml/report\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Cleft.sedml/report\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Cleft.sedml/report\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Cleft.sedml/report\ncreating attribute sedmlId in /FigS4/FigS4-Cleft.sedml/report\ncreating attribute sedmlName in /FigS4/FigS4-Cleft.sedml/report\ncreating attribute uri in /FigS4/FigS4-Cleft.sedml/report\ncreating attribute combineArchiveLocation in /FigS4/FigS4-Cright.sedml\ncreating attribute uri in /FigS4/FigS4-Cright.sedml\ncreating attribute _type in /FigS4/FigS4-Cright.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Cright.sedml/plot\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Cright.sedml/plot\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Cright.sedml/plot\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Cright.sedml/plot\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Cright.sedml/plot\ncreating attribute sedmlId in /FigS4/FigS4-Cright.sedml/plot\ncreating attribute uri in /FigS4/FigS4-Cright.sedml/plot\ncreating attribute _type in /FigS4/FigS4-Cright.sedml/report\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Cright.sedml/report\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Cright.sedml/report\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Cright.sedml/report\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Cright.sedml/report\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Cright.sedml/report\ncreating attribute sedmlId in /FigS4/FigS4-Cright.sedml/report\ncreating attribute sedmlName in /FigS4/FigS4-Cright.sedml/report\ncreating attribute uri in /FigS4/FigS4-Cright.sedml/report\ncreating attribute combineArchiveLocation in /FigS4/FigS4-Dleft.sedml\ncreating attribute uri in /FigS4/FigS4-Dleft.sedml\ncreating attribute _type in /FigS4/FigS4-Dleft.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Dleft.sedml/plot\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Dleft.sedml/plot\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Dleft.sedml/plot\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Dleft.sedml/plot\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Dleft.sedml/plot\ncreating attribute sedmlId in /FigS4/FigS4-Dleft.sedml/plot\ncreating attribute uri in /FigS4/FigS4-Dleft.sedml/plot\ncreating attribute _type in /FigS4/FigS4-Dleft.sedml/report\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Dleft.sedml/report\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Dleft.sedml/report\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Dleft.sedml/report\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Dleft.sedml/report\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Dleft.sedml/report\ncreating attribute sedmlId in /FigS4/FigS4-Dleft.sedml/report\ncreating attribute sedmlName in /FigS4/FigS4-Dleft.sedml/report\ncreating attribute uri in /FigS4/FigS4-Dleft.sedml/report\ncreating attribute combineArchiveLocation in /FigS4/FigS4-Dright.sedml\ncreating attribute uri in /FigS4/FigS4-Dright.sedml\ncreating attribute _type in /FigS4/FigS4-Dright.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Dright.sedml/plot\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Dright.sedml/plot\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Dright.sedml/plot\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Dright.sedml/plot\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Dright.sedml/plot\ncreating attribute sedmlId in /FigS4/FigS4-Dright.sedml/plot\ncreating attribute uri in /FigS4/FigS4-Dright.sedml/plot\ncreating attribute _type in /FigS4/FigS4-Dright.sedml/report\ncreating attribute sedmlDataSetDataTypes in /FigS4/FigS4-Dright.sedml/report\ncreating attribute sedmlDataSetIds in /FigS4/FigS4-Dright.sedml/report\ncreating attribute sedmlDataSetLabels in /FigS4/FigS4-Dright.sedml/report\ncreating attribute sedmlDataSetNames in /FigS4/FigS4-Dright.sedml/report\ncreating attribute sedmlDataSetShapes in /FigS4/FigS4-Dright.sedml/report\ncreating attribute sedmlId in /FigS4/FigS4-Dright.sedml/report\ncreating attribute sedmlName in /FigS4/FigS4-Dright.sedml/report\ncreating attribute uri in /FigS4/FigS4-Dright.sedml/report\ncreating attribute combineArchiveLocation in /FigS5\ncreating attribute uri in /FigS5\ncreating attribute combineArchiveLocation in /FigS5/FigS5A.sedml\ncreating attribute uri in /FigS5/FigS5A.sedml\ncreating attribute _type in /FigS5/FigS5A.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /FigS5/FigS5A.sedml/plot\ncreating attribute sedmlDataSetIds in /FigS5/FigS5A.sedml/plot\ncreating attribute sedmlDataSetLabels in /FigS5/FigS5A.sedml/plot\ncreating attribute sedmlDataSetNames in /FigS5/FigS5A.sedml/plot\ncreating attribute sedmlDataSetShapes in /FigS5/FigS5A.sedml/plot\ncreating attribute sedmlId in /FigS5/FigS5A.sedml/plot\ncreating attribute uri in /FigS5/FigS5A.sedml/plot\ncreating attribute _type in /FigS5/FigS5A.sedml/report\ncreating attribute sedmlDataSetDataTypes in /FigS5/FigS5A.sedml/report\ncreating attribute sedmlDataSetIds in /FigS5/FigS5A.sedml/report\ncreating attribute sedmlDataSetLabels in /FigS5/FigS5A.sedml/report\ncreating attribute sedmlDataSetNames in /FigS5/FigS5A.sedml/report\ncreating attribute sedmlDataSetShapes in /FigS5/FigS5A.sedml/report\ncreating attribute sedmlId in /FigS5/FigS5A.sedml/report\ncreating attribute sedmlName in /FigS5/FigS5A.sedml/report\ncreating attribute uri in /FigS5/FigS5A.sedml/report\ncreating attribute combineArchiveLocation in /FigS5/FigS5B.sedml\ncreating attribute uri in /FigS5/FigS5B.sedml\ncreating attribute _type in /FigS5/FigS5B.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /FigS5/FigS5B.sedml/plot\ncreating attribute sedmlDataSetIds in /FigS5/FigS5B.sedml/plot\ncreating attribute sedmlDataSetLabels in /FigS5/FigS5B.sedml/plot\ncreating attribute sedmlDataSetNames in /FigS5/FigS5B.sedml/plot\ncreating attribute sedmlDataSetShapes in /FigS5/FigS5B.sedml/plot\ncreating attribute sedmlId in /FigS5/FigS5B.sedml/plot\ncreating attribute uri in /FigS5/FigS5B.sedml/plot\ncreating attribute _type in /FigS5/FigS5B.sedml/report\ncreating attribute sedmlDataSetDataTypes in /FigS5/FigS5B.sedml/report\ncreating attribute sedmlDataSetIds in /FigS5/FigS5B.sedml/report\ncreating attribute sedmlDataSetLabels in /FigS5/FigS5B.sedml/report\ncreating attribute sedmlDataSetNames in /FigS5/FigS5B.sedml/report\ncreating attribute sedmlDataSetShapes in /FigS5/FigS5B.sedml/report\ncreating attribute sedmlId in /FigS5/FigS5B.sedml/report\ncreating attribute sedmlName in /FigS5/FigS5B.sedml/report\ncreating attribute uri in /FigS5/FigS5B.sedml/report\ncreate_links: /\ngot link: Fig2\ngot link: Fig3\ngot link: Fig6\ngot link: FigS4\ngot link: FigS5\ncreate_links: /Fig2\ngot link: Fig2B.sedml\ncreate_links: /Fig2/Fig2B.sedml\ngot link: plot\ngot link: report\ncreate_links: /Fig3\ngot link: Fig3B.sedml\ncreate_links: /Fig3/Fig3B.sedml\ngot link: plot\ngot link: report\ncreate_links: /Fig6\ngot link: Fig6.sedml\ncreate_links: /Fig6/Fig6.sedml\ngot link: plot\ngot link: report\ncreate_links: /FigS4\ngot link: FigS4-Aleft.sedml\ngot link: FigS4-Aright.sedml\ngot link: FigS4-Bleft.sedml\ngot link: FigS4-Bright.sedml\ngot link: FigS4-Cleft.sedml\ngot link: FigS4-Cright.sedml\ngot link: FigS4-Dleft.sedml\ngot link: FigS4-Dright.sedml\ncreate_links: /FigS4/FigS4-Aleft.sedml\ngot link: plot\ngot link: report\ncreate_links: /FigS4/FigS4-Aright.sedml\ngot link: plot\ngot link: report\ncreate_links: /FigS4/FigS4-Bleft.sedml\ngot link: plot\ngot link: report\ncreate_links: /FigS4/FigS4-Bright.sedml\ngot link: plot\ngot link: report\ncreate_links: /FigS4/FigS4-Cleft.sedml\ngot link: plot\ngot link: report\ncreate_links: /FigS4/FigS4-Cright.sedml\ngot link: plot\ngot link: report\ncreate_links: /FigS4/FigS4-Dleft.sedml\ngot link: plot\ngot link: report\ncreate_links: /FigS4/FigS4-Dright.sedml\ngot link: plot\ngot link: report\ncreate_links: /FigS5\ngot link: FigS5A.sedml\ngot link: FigS5B.sedml\ncreate_links: /FigS5/FigS5A.sedml\ngot link: plot\ngot link: report\ncreate_links: /FigS5/FigS5B.sedml\ngot link: plot\ngot link: report\nwrite_dataset src: /Fig2/Fig2B.sedml/plot to tgt: /Fig2/Fig2B.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /Fig2/Fig2B.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /Fig2/Fig2B.sedml/plot\nwrite_dataset src: /Fig2/Fig2B.sedml/report to tgt: /Fig2/Fig2B.sedml/report, shape: (23, 1001), type: float64\niterating over chunks for /Fig2/Fig2B.sedml/report\nwriting dataset data for slice: (slice(0, 23, 1), slice(0, 1001, 1))\ndone with dataload for /Fig2/Fig2B.sedml/report\nwrite_dataset src: /Fig3/Fig3B.sedml/plot to tgt: /Fig3/Fig3B.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /Fig3/Fig3B.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /Fig3/Fig3B.sedml/plot\nwrite_dataset src: /Fig3/Fig3B.sedml/report to tgt: /Fig3/Fig3B.sedml/report, shape: (23, 1001), type: float64\niterating over chunks for /Fig3/Fig3B.sedml/report\nwriting dataset data for slice: (slice(0, 23, 1), slice(0, 1001, 1))\ndone with dataload for /Fig3/Fig3B.sedml/report\nwrite_dataset src: /Fig6/Fig6.sedml/plot to tgt: /Fig6/Fig6.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /Fig6/Fig6.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /Fig6/Fig6.sedml/plot\nwrite_dataset src: /Fig6/Fig6.sedml/report to tgt: /Fig6/Fig6.sedml/report, shape: (23, 1001), type: float64\niterating over chunks for /Fig6/Fig6.sedml/report\nwriting dataset data for slice: (slice(0, 23, 1), slice(0, 1001, 1))\ndone with dataload for /Fig6/Fig6.sedml/report\nwrite_dataset src: /FigS4/FigS4-Aleft.sedml/plot to tgt: /FigS4/FigS4-Aleft.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Aleft.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Aleft.sedml/plot\nwrite_dataset src: /FigS4/FigS4-Aleft.sedml/report to tgt: /FigS4/FigS4-Aleft.sedml/report, shape: (23, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Aleft.sedml/report\nwriting dataset data for slice: (slice(0, 23, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Aleft.sedml/report\nwrite_dataset src: /FigS4/FigS4-Aright.sedml/plot to tgt: /FigS4/FigS4-Aright.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Aright.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Aright.sedml/plot\nwrite_dataset src: /FigS4/FigS4-Aright.sedml/report to tgt: /FigS4/FigS4-Aright.sedml/report, shape: (23, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Aright.sedml/report\nwriting dataset data for slice: (slice(0, 23, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Aright.sedml/report\nwrite_dataset src: /FigS4/FigS4-Bleft.sedml/plot to tgt: /FigS4/FigS4-Bleft.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Bleft.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Bleft.sedml/plot\nwrite_dataset src: /FigS4/FigS4-Bleft.sedml/report to tgt: /FigS4/FigS4-Bleft.sedml/report, shape: (23, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Bleft.sedml/report\nwriting dataset data for slice: (slice(0, 23, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Bleft.sedml/report\nwrite_dataset src: /FigS4/FigS4-Bright.sedml/plot to tgt: /FigS4/FigS4-Bright.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Bright.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Bright.sedml/plot\nwrite_dataset src: /FigS4/FigS4-Bright.sedml/report to tgt: /FigS4/FigS4-Bright.sedml/report, shape: (23, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Bright.sedml/report\nwriting dataset data for slice: (slice(0, 23, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Bright.sedml/report\nwrite_dataset src: /FigS4/FigS4-Cleft.sedml/plot to tgt: /FigS4/FigS4-Cleft.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Cleft.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Cleft.sedml/plot\nwrite_dataset src: /FigS4/FigS4-Cleft.sedml/report to tgt: /FigS4/FigS4-Cleft.sedml/report, shape: (23, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Cleft.sedml/report\nwriting dataset data for slice: (slice(0, 23, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Cleft.sedml/report\nwrite_dataset src: /FigS4/FigS4-Cright.sedml/plot to tgt: /FigS4/FigS4-Cright.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Cright.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Cright.sedml/plot\nwrite_dataset src: /FigS4/FigS4-Cright.sedml/report to tgt: /FigS4/FigS4-Cright.sedml/report, shape: (23, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Cright.sedml/report\nwriting dataset data for slice: (slice(0, 23, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Cright.sedml/report\nwrite_dataset src: /FigS4/FigS4-Dleft.sedml/plot to tgt: /FigS4/FigS4-Dleft.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Dleft.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Dleft.sedml/plot\nwrite_dataset src: /FigS4/FigS4-Dleft.sedml/report to tgt: /FigS4/FigS4-Dleft.sedml/report, shape: (23, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Dleft.sedml/report\nwriting dataset data for slice: (slice(0, 23, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Dleft.sedml/report\nwrite_dataset src: /FigS4/FigS4-Dright.sedml/plot to tgt: /FigS4/FigS4-Dright.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Dright.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Dright.sedml/plot\nwrite_dataset src: /FigS4/FigS4-Dright.sedml/report to tgt: /FigS4/FigS4-Dright.sedml/report, shape: (23, 1001), type: float64\niterating over chunks for /FigS4/FigS4-Dright.sedml/report\nwriting dataset data for slice: (slice(0, 23, 1), slice(0, 1001, 1))\ndone with dataload for /FigS4/FigS4-Dright.sedml/report\nwrite_dataset src: /FigS5/FigS5A.sedml/plot to tgt: /FigS5/FigS5A.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /FigS5/FigS5A.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /FigS5/FigS5A.sedml/plot\nwrite_dataset src: /FigS5/FigS5A.sedml/report to tgt: /FigS5/FigS5A.sedml/report, shape: (27, 1001), type: float64\niterating over chunks for /FigS5/FigS5A.sedml/report\nwriting dataset data for slice: (slice(0, 27, 1), slice(0, 1001, 1))\ndone with dataload for /FigS5/FigS5A.sedml/report\nwrite_dataset src: /FigS5/FigS5B.sedml/plot to tgt: /FigS5/FigS5B.sedml/plot, shape: (2, 701), type: float64\niterating over chunks for /FigS5/FigS5B.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 701, 1))\ndone with dataload for /FigS5/FigS5B.sedml/plot\nwrite_dataset src: /FigS5/FigS5B.sedml/report to tgt: /FigS5/FigS5B.sedml/report, shape: (26, 701), type: float64\niterating over chunks for /FigS5/FigS5B.sedml/report\nwriting dataset data for slice: (slice(0, 26, 1), slice(0, 701, 1))\ndone with dataload for /FigS5/FigS5B.sedml/report\nload_file complete\nFile outputs/reports.h5 uploaded to domain: 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outputs/reports.h5 (deflated 15%)\n  adding: rawLog.txt (deflated 91%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 9.1 KiB/1.6 MiB (144.0 KiB/s) with 16 file(s) remaining\rupload: outputs/Fig2/Fig2B.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/Fig2/Fig2B.sedml/plot.pdf\nCompleted 9.1 KiB/1.6 MiB (144.0 KiB/s) with 15 file(s) remaining\rCompleted 265.1 KiB/1.6 MiB (3.2 MiB/s) with 15 file(s) remaining\rCompleted 521.1 KiB/1.6 MiB (5.9 MiB/s) with 15 file(s) remaining\rCompleted 777.1 KiB/1.6 MiB (8.5 MiB/s) with 15 file(s) remaining\rCompleted 1.0 MiB/1.6 MiB (10.7 MiB/s) with 15 file(s) remaining \rCompleted 1.3 MiB/1.6 MiB (13.2 MiB/s) with 15 file(s) remaining \rCompleted 1.3 MiB/1.6 MiB (12.2 MiB/s) with 15 file(s) remaining \rupload: outputs/Fig3/Fig3B.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/Fig3/Fig3B.sedml/plot.pdf\nCompleted 1.3 MiB/1.6 MiB (12.2 MiB/s) with 14 file(s) remaining\rCompleted 1.3 MiB/1.6 MiB (10.9 MiB/s) with 14 file(s) remaining\rupload: outputs/Fig6/Fig6.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/Fig6/Fig6.sedml/plot.pdf\nCompleted 1.3 MiB/1.6 MiB (10.9 MiB/s) with 13 file(s) remaining\rCompleted 1.3 MiB/1.6 MiB (10.3 MiB/s) with 13 file(s) remaining\rupload: outputs/FigS4/FigS4-Aleft.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/FigS4/FigS4-Aleft.sedml/plot.pdf\nCompleted 1.3 MiB/1.6 MiB (10.3 MiB/s) with 12 file(s) remaining\rCompleted 1.3 MiB/1.6 MiB (9.1 MiB/s) with 12 file(s) remaining \rupload: outputs/FigS4/FigS4-Aright.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/FigS4/FigS4-Aright.sedml/plot.pdf\nCompleted 1.3 MiB/1.6 MiB (9.1 MiB/s) with 11 file(s) remaining\rCompleted 1.4 MiB/1.6 MiB (9.5 MiB/s) with 11 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/plots.zip\nCompleted 1.4 MiB/1.6 MiB (9.5 MiB/s) with 10 file(s) remaining\rCompleted 1.4 MiB/1.6 MiB (8.7 MiB/s) with 10 file(s) remaining\rupload: outputs/FigS4/FigS4-Bleft.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/FigS4/FigS4-Bleft.sedml/plot.pdf\nCompleted 1.4 MiB/1.6 MiB (8.7 MiB/s) with 9 file(s) remaining\rCompleted 1.5 MiB/1.6 MiB (9.1 MiB/s) with 9 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/output.zip\nCompleted 1.5 MiB/1.6 MiB (9.1 MiB/s) with 8 file(s) remaining\rCompleted 1.5 MiB/1.6 MiB (9.0 MiB/s) with 8 file(s) remaining\rupload: outputs/FigS5/FigS5B.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/FigS5/FigS5B.sedml/plot.pdf\nCompleted 1.5 MiB/1.6 MiB (9.0 MiB/s) with 7 file(s) remaining\rCompleted 1.6 MiB/1.6 MiB (8.9 MiB/s) with 7 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/rawLog.txt\nCompleted 1.6 MiB/1.6 MiB (8.9 MiB/s) with 6 file(s) remaining\rCompleted 1.6 MiB/1.6 MiB (8.9 MiB/s) with 6 file(s) remaining\rupload: outputs/FigS4/FigS4-Dright.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/FigS4/FigS4-Dright.sedml/plot.pdf\nCompleted 1.6 MiB/1.6 MiB (8.9 MiB/s) with 5 file(s) remaining\rCompleted 1.6 MiB/1.6 MiB (8.8 MiB/s) with 5 file(s) remaining\rCompleted 1.6 MiB/1.6 MiB (8.7 MiB/s) with 5 file(s) remaining\rupload: outputs/FigS4/FigS4-Dleft.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/FigS4/FigS4-Dleft.sedml/plot.pdf\nCompleted 1.6 MiB/1.6 MiB (8.7 MiB/s) with 4 file(s) remaining\rupload: outputs/FigS4/FigS4-Cleft.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/FigS4/FigS4-Cleft.sedml/plot.pdf\nCompleted 1.6 MiB/1.6 MiB (8.7 MiB/s) with 3 file(s) remaining\rCompleted 1.6 MiB/1.6 MiB (8.5 MiB/s) with 3 file(s) remaining\rupload: outputs/FigS4/FigS4-Bright.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/FigS4/FigS4-Bright.sedml/plot.pdf\nCompleted 1.6 MiB/1.6 MiB (8.5 MiB/s) with 2 file(s) remaining\rCompleted 1.6 MiB/1.6 MiB (7.7 MiB/s) with 2 file(s) remaining\rupload: outputs/FigS5/FigS5A.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/FigS5/FigS5A.sedml/plot.pdf\nCompleted 1.6 MiB/1.6 MiB (7.7 MiB/s) with 1 file(s) remaining\rCompleted 1.6 MiB/1.6 MiB (7.5 MiB/s) with 1 file(s) remaining\rupload: outputs/FigS4/FigS4-Cright.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/FigS4/FigS4-Cright.sedml/plot.pdf\nCompleted 256.0 KiB/1.5 MiB (6.4 MiB/s) with 1 file(s) remaining\rCompleted 512.0 KiB/1.5 MiB (11.0 MiB/s) with 1 file(s) remaining\rCompleted 768.0 KiB/1.5 MiB (16.0 MiB/s) with 1 file(s) remaining\rCompleted 1.0 MiB/1.5 MiB (18.9 MiB/s) with 1 file(s) remaining  \rCompleted 1.2 MiB/1.5 MiB (23.0 MiB/s) with 1 file(s) remaining  \rCompleted 1.5 MiB/1.5 MiB (11.7 MiB/s) with 1 file(s) remaining  \rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/reports.h5\nCompleted 62.7 KiB/62.7 KiB (768.4 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/621d4b27b50991044c79b909/outputs/log.yml\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","skipReason":null,"exception":null,"status":"SUCCEEDED"}