{"sedDocuments":[{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_H1"},{"status":"SUCCEEDED","id":"data_set_H2"},{"status":"SUCCEEDED","id":"data_set_H3"},{"status":"SUCCEEDED","id":"data_set_S1"},{"status":"SUCCEEDED","id":"data_set_S1_P"},{"status":"SUCCEEDED","id":"data_set_S2"},{"status":"SUCCEEDED","id":"data_set_S3"},{"status":"SUCCEEDED","id":"data_set_V1"},{"status":"SUCCEEDED","id":"data_set_V2"},{"status":"SUCCEEDED","id":"data_set_V3"}],"duration":0.11941,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.1774,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"10000.0","key":"total"},{"value":"qualrk","key":"meth"},{"value":"0.0","key":"t0"},{"value":"10","key":"dt"},{"value":"1","key":"njmp"}],"algorithm":"KISAO_0000672","duration":0.134738,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":0.563001,"output":"Archive contains 3 SED-ML documents with 3 models, 3 simulations, 3 tasks, 3 reports, and 3 plots:\r\n  3p/3p.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 11 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  4p-e/4p-e.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 14 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  4p-r/4p-r.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 14 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n\r\nExecuting SED-ML file 1: 3p/3p.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"3p/3p.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_H1"},{"status":"SUCCEEDED","id":"data_set_H2"},{"status":"SUCCEEDED","id":"data_set_H3"},{"status":"SUCCEEDED","id":"data_set_H4"},{"status":"SUCCEEDED","id":"data_set_S1"},{"status":"SUCCEEDED","id":"data_set_S1_SLOW"},{"status":"SUCCEEDED","id":"data_set_S2"},{"status":"SUCCEEDED","id":"data_set_S3"},{"status":"SUCCEEDED","id":"data_set_S4"},{"status":"SUCCEEDED","id":"data_set_V1"},{"status":"SUCCEEDED","id":"data_set_V2"},{"status":"SUCCEEDED","id":"data_set_V3"},{"status":"SUCCEEDED","id":"data_set_V4"}],"duration":0.131791,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.154017,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"10000.0","key":"total"},{"value":"qualrk","key":"meth"},{"value":"0.0","key":"t0"},{"value":"10","key":"dt"},{"value":"1","key":"njmp"}],"algorithm":"KISAO_0000672","duration":0.16511,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":0.609111,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 2: 4p-e/4p-e.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"4p-e/4p-e.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_H1"},{"status":"SUCCEEDED","id":"data_set_H2"},{"status":"SUCCEEDED","id":"data_set_H3"},{"status":"SUCCEEDED","id":"data_set_H4"},{"status":"SUCCEEDED","id":"data_set_S1"},{"status":"SUCCEEDED","id":"data_set_S1_SLOW"},{"status":"SUCCEEDED","id":"data_set_S2"},{"status":"SUCCEEDED","id":"data_set_S3"},{"status":"SUCCEEDED","id":"data_set_S4"},{"status":"SUCCEEDED","id":"data_set_V1"},{"status":"SUCCEEDED","id":"data_set_V2"},{"status":"SUCCEEDED","id":"data_set_V3"},{"status":"SUCCEEDED","id":"data_set_V4"}],"duration":0.131138,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.154218,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"10000.0","key":"total"},{"value":"qualrk","key":"meth"},{"value":"0.0","key":"t0"},{"value":"10","key":"dt"},{"value":"1","key":"njmp"}],"algorithm":"KISAO_0000672","duration":0.173083,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":0.609118,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 3: 4p-r/4p-r.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"4p-r/4p-r.sedml"}],"duration":2.341926,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    472      0 --:--:-- --:--:-- --:--:--   474\n\r100  271k  100  271k    0     0   656k      0 --:--:-- --:--:-- --:--:--  656k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive has warnings.\r\n  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 2 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 3 SED documents:\n  SED documents (3):\n    Succeeded: 3\n    Skipped: 0\n    Failed: 0\n  Tasks (3):\n    Succeeded: 3\n    Skipped: 0\n    Failed: 0\n  Outputs (6):\n    Succeeded: 6\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/README.html    \n  inflating: contents/4p-r/4p-r_severe_rett_intact.set  \n  inflating: contents/4p-r/4p-r_severe_rett_intact_DRUG.set  \n  inflating: contents/4p-r/4p-r_intact_DRUG.set  \n  inflating: contents/4p-r/4p-r.ode  \n  inflating: contents/4p-r/4p-r_mod_rett_intact_DRUG.set  \n  inflating: contents/4p-r/4p-r_vagotomized_DRUG.set  \n  inflating: contents/4p-r/4p-r_intact.set  \n  inflating: contents/4p-r/4p-r_mod_rett_vagotomized.set  \n  inflating: contents/4p-r/4p-r_mod_rett_vagotomized_DRUG.set  \n  inflating: contents/4p-r/4p-r_vagotomized.set  \n  inflating: contents/4p-r/4p-r_severe_rett_vagotomized.set  \n  inflating: contents/4p-r/4p-r_severe_rett_vagotomized_DRUG.set  \n  inflating: contents/4p-r/4p-r_mod_rett_intact.set  \n  inflating: contents/4p-e/4p-e_severe_rett_intact.set  \n  inflating: contents/4p-e/4p-e_vagotomized_DRUG.set  \n  inflating: contents/4p-e/4p-e_mod_rett_intact_DRUG.set  \n  inflating: contents/4p-e/4p-e_severe_rett_vagotomized_DRUG.set  \n  inflating: contents/4p-e/4p-e_severe_rett_intact_DRUG.set  \n  inflating: contents/4p-e/4p-e_intact.set  \n  inflating: contents/4p-e/4p-e.ode  \n  inflating: contents/4p-e/4p-e_mod_rett_vagotomized.set  \n  inflating: contents/4p-e/4p-e_vagotomized.set  \n  inflating: contents/4p-e/4p-e_intact_DRUG.set  \n  inflating: contents/4p-e/4p-e_mod_rett_intact.set  \n  inflating: contents/4p-e/4p-e_mod_rett_vagotomized_DRUG.set  \n  inflating: contents/4p-e/4p-e_severe_rett_vagotomized.set  \n  inflating: contents/Matlab_scripts/orbit_tracker.m  \n  inflating: contents/Matlab_scripts/traj_plotter_many.m  \n  inflating: contents/Matlab_scripts/set_bar_graphs.m  \n  inflating: contents/Matlab_scripts/rett_figure_script.m  \n  inflating: contents/Matlab_scripts/traj_plotter.m  \n  inflating: contents/3p/3p_mod_rett_vagotomized.set  \n  inflating: contents/3p/3p_mod_rett_intact_DRUG.set  \n  inflating: contents/3p/3p_intact.set  \n  inflating: contents/3p/3p_severe_rett_intact.set  \n  inflating: contents/3p/3p_severe_rett_vagotomized.set  \n  inflating: contents/3p/3p_mod_rett_vagotomized_DRUG.set  \n  inflating: contents/3p/3p_severe_rett_intact_DRUG.set  \n  inflating: contents/3p/3p_mod_rett_intact.set  \n  inflating: contents/3p/3p.ode      \n  inflating: contents/3p/3p_vagotomized.set  \n  inflating: contents/3p/3p_severe_rett_vagotomized_DRUG.set  \n  inflating: contents/3p/3p_vagotomized_DRUG.set  \n  inflating: contents/3p/3p_intact_DRUG.set  \n  inflating: contents/clewley/RunXPP.m  \n  inflating: contents/clewley/ChangeXPPsetFile.m  \n  inflating: contents/clewley/ChangeXPPodeFile.m  \n  inflating: contents/3p/3p.sedml    \n  inflating: contents/4p-e/4p-e.sedml  \n  inflating: contents/4p-r/4p-r.sedml  \n  inflating: contents/metadata.rdf   \n  inflating: contents/screenshot1.png  \n  inflating: contents/screenshot2.png  \n  inflating: contents/screenshot3.png  \n  inflating: contents/manifest.xml   \nCompleted 9.3 KiB/~67.5 KiB (154.3 KiB/s) with ~14 file(s) remaining (calculating...)\rupload: contents/3p/3p.sedml to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p.sedml\nCompleted 9.3 KiB/~67.5 KiB (154.3 KiB/s) with ~13 file(s) remaining (calculating...)\rCompleted 13.9 KiB/479.4 KiB (132.8 KiB/s) with 55 file(s) remaining                 \rupload: contents/3p/3p_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_intact.set\nCompleted 13.9 KiB/479.4 KiB (132.8 KiB/s) with 54 file(s) remaining\rCompleted 18.6 KiB/479.4 KiB (168.9 KiB/s) with 54 file(s) remaining\rupload: contents/3p/3p_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_vagotomized.set\nCompleted 18.6 KiB/479.4 KiB (168.9 KiB/s) with 53 file(s) remaining\rCompleted 21.4 KiB/479.4 KiB (160.8 KiB/s) with 53 file(s) remaining\rupload: contents/3p/3p.ode to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p.ode\nCompleted 21.4 KiB/479.4 KiB (160.8 KiB/s) with 52 file(s) remaining\rCompleted 26.0 KiB/479.4 KiB (189.0 KiB/s) with 52 file(s) remaining\rupload: contents/3p/3p_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_intact_DRUG.set\nCompleted 26.0 KiB/479.4 KiB (189.0 KiB/s) with 51 file(s) remaining\rCompleted 30.6 KiB/479.4 KiB (218.2 KiB/s) with 51 file(s) remaining\rupload: contents/3p/3p_severe_rett_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_severe_rett_intact_DRUG.set\nCompleted 30.6 KiB/479.4 KiB (218.2 KiB/s) with 50 file(s) remaining\rCompleted 35.2 KiB/479.4 KiB (232.1 KiB/s) with 50 file(s) remaining\rupload: contents/3p/3p_severe_rett_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_severe_rett_intact.set\nCompleted 35.2 KiB/479.4 KiB (232.1 KiB/s) with 49 file(s) remaining\rCompleted 46.4 KiB/479.4 KiB (299.2 KiB/s) with 49 file(s) remaining\rupload: contents/4p-e/4p-e.sedml to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e.sedml\nCompleted 46.4 KiB/479.4 KiB (299.2 KiB/s) with 48 file(s) remaining\rCompleted 51.0 KiB/479.4 KiB (311.9 KiB/s) with 48 file(s) remaining\rupload: contents/3p/3p_severe_rett_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_severe_rett_vagotomized.set\nCompleted 51.0 KiB/479.4 KiB (311.9 KiB/s) with 47 file(s) remaining\rCompleted 55.6 KiB/479.4 KiB (335.8 KiB/s) with 47 file(s) remaining\rupload: contents/3p/3p_severe_rett_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_severe_rett_vagotomized_DRUG.set\nCompleted 55.6 KiB/479.4 KiB (335.8 KiB/s) with 46 file(s) remaining\rCompleted 61.1 KiB/479.4 KiB (344.9 KiB/s) with 46 file(s) remaining\rupload: contents/4p-e/4p-e_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_intact.set\nCompleted 61.1 KiB/479.4 KiB (344.9 KiB/s) with 45 file(s) remaining\rCompleted 66.5 KiB/479.4 KiB (364.1 KiB/s) with 45 file(s) remaining\rupload: contents/4p-e/4p-e_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_intact_DRUG.set\nCompleted 66.5 KiB/479.4 KiB (364.1 KiB/s) with 44 file(s) remaining\rCompleted 72.0 KiB/479.4 KiB (382.5 KiB/s) with 44 file(s) remaining\rupload: contents/4p-e/4p-e_mod_rett_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_mod_rett_intact.set\nCompleted 72.0 KiB/479.4 KiB (382.5 KiB/s) with 43 file(s) remaining\rCompleted 77.5 KiB/479.4 KiB (403.2 KiB/s) with 43 file(s) remaining\rupload: contents/4p-e/4p-e_mod_rett_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_mod_rett_intact_DRUG.set\nCompleted 77.5 KiB/479.4 KiB (403.2 KiB/s) with 42 file(s) remaining\rCompleted 82.2 KiB/479.4 KiB (420.2 KiB/s) with 42 file(s) remaining\rupload: contents/3p/3p_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_vagotomized_DRUG.set\nCompleted 82.2 KiB/479.4 KiB (420.2 KiB/s) with 41 file(s) remaining\rCompleted 87.7 KiB/479.4 KiB (438.8 KiB/s) with 41 file(s) remaining\rupload: contents/4p-e/4p-e_mod_rett_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_mod_rett_vagotomized.set\nCompleted 87.7 KiB/479.4 KiB (438.8 KiB/s) with 40 file(s) remaining\rCompleted 93.2 KiB/479.4 KiB (458.5 KiB/s) with 40 file(s) remaining\rupload: contents/4p-e/4p-e_mod_rett_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_mod_rett_vagotomized_DRUG.set\nCompleted 93.2 KiB/479.4 KiB (458.5 KiB/s) with 39 file(s) remaining\rCompleted 96.7 KiB/479.4 KiB (470.8 KiB/s) with 39 file(s) remaining\rupload: contents/4p-e/4p-e.ode to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e.ode\nCompleted 96.7 KiB/479.4 KiB (470.8 KiB/s) with 38 file(s) remaining\rCompleted 102.1 KiB/479.4 KiB (475.0 KiB/s) with 38 file(s) remaining\rupload: contents/4p-e/4p-e_severe_rett_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_severe_rett_intact.set\nCompleted 102.1 KiB/479.4 KiB (475.0 KiB/s) with 37 file(s) remaining\rCompleted 107.6 KiB/479.4 KiB (484.9 KiB/s) with 37 file(s) remaining\rupload: contents/4p-e/4p-e_severe_rett_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_severe_rett_intact_DRUG.set\nCompleted 107.6 KiB/479.4 KiB (484.9 KiB/s) with 36 file(s) remaining\rCompleted 113.1 KiB/479.4 KiB (478.6 KiB/s) with 36 file(s) remaining\rupload: contents/4p-e/4p-e_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_vagotomized.set\nCompleted 113.1 KiB/479.4 KiB (478.6 KiB/s) with 35 file(s) remaining\rCompleted 116.6 KiB/479.4 KiB (478.2 KiB/s) with 35 file(s) remaining\rupload: contents/4p-r/4p-r.ode to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r.ode\nCompleted 116.6 KiB/479.4 KiB (478.2 KiB/s) with 34 file(s) remaining\rCompleted 128.1 KiB/479.4 KiB (516.8 KiB/s) with 34 file(s) remaining\rupload: contents/4p-r/4p-r.sedml to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r.sedml\nCompleted 128.1 KiB/479.4 KiB (516.8 KiB/s) with 33 file(s) remaining\rCompleted 133.6 KiB/479.4 KiB (527.5 KiB/s) with 33 file(s) remaining\rupload: contents/4p-e/4p-e_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_vagotomized_DRUG.set\nCompleted 133.6 KiB/479.4 KiB (527.5 KiB/s) with 32 file(s) remaining\rCompleted 139.0 KiB/479.4 KiB (543.6 KiB/s) with 32 file(s) remaining\rupload: contents/4p-e/4p-e_severe_rett_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_severe_rett_vagotomized.set\nCompleted 139.0 KiB/479.4 KiB (543.6 KiB/s) with 31 file(s) remaining\rCompleted 144.5 KiB/479.4 KiB (560.8 KiB/s) with 31 file(s) remaining\rupload: contents/4p-e/4p-e_severe_rett_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-e/4p-e_severe_rett_vagotomized_DRUG.set\nCompleted 144.5 KiB/479.4 KiB (560.8 KiB/s) with 30 file(s) remaining\rCompleted 149.9 KiB/479.4 KiB (567.5 KiB/s) with 30 file(s) remaining\rupload: contents/4p-r/4p-r_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_intact_DRUG.set\nCompleted 149.9 KiB/479.4 KiB (567.5 KiB/s) with 29 file(s) remaining\rCompleted 155.4 KiB/479.4 KiB (584.2 KiB/s) with 29 file(s) remaining\rupload: contents/4p-r/4p-r_mod_rett_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_mod_rett_intact.set\nCompleted 155.4 KiB/479.4 KiB (584.2 KiB/s) with 28 file(s) remaining\rCompleted 160.9 KiB/479.4 KiB (590.9 KiB/s) with 28 file(s) remaining\rupload: contents/4p-r/4p-r_mod_rett_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_mod_rett_intact_DRUG.set\nCompleted 160.9 KiB/479.4 KiB (590.9 KiB/s) with 27 file(s) remaining\rCompleted 166.3 KiB/479.4 KiB (591.6 KiB/s) with 27 file(s) remaining\rupload: contents/4p-r/4p-r_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_intact.set\nCompleted 166.3 KiB/479.4 KiB (591.6 KiB/s) with 26 file(s) remaining\rCompleted 171.8 KiB/479.4 KiB (588.7 KiB/s) with 26 file(s) remaining\rupload: contents/4p-r/4p-r_mod_rett_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_mod_rett_vagotomized.set\nCompleted 171.8 KiB/479.4 KiB (588.7 KiB/s) with 25 file(s) remaining\rCompleted 176.4 KiB/479.4 KiB (577.3 KiB/s) with 25 file(s) remaining\rupload: contents/3p/3p_mod_rett_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_mod_rett_vagotomized.set\nCompleted 176.4 KiB/479.4 KiB (577.3 KiB/s) with 24 file(s) remaining\rCompleted 182.0 KiB/479.4 KiB (585.6 KiB/s) with 24 file(s) remaining\rupload: contents/4p-r/4p-r_severe_rett_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_severe_rett_intact_DRUG.set\nCompleted 182.0 KiB/479.4 KiB (585.6 KiB/s) with 23 file(s) remaining\rCompleted 187.5 KiB/479.4 KiB (599.3 KiB/s) with 23 file(s) remaining\rupload: contents/4p-r/4p-r_severe_rett_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_severe_rett_vagotomized_DRUG.set\nCompleted 187.5 KiB/479.4 KiB (599.3 KiB/s) with 22 file(s) remaining\rCompleted 192.9 KiB/479.4 KiB (602.8 KiB/s) with 22 file(s) remaining\rupload: contents/4p-r/4p-r_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_vagotomized_DRUG.set\nCompleted 192.9 KiB/479.4 KiB (602.8 KiB/s) with 21 file(s) remaining\rCompleted 197.5 KiB/479.4 KiB (602.4 KiB/s) with 21 file(s) remaining\rupload: contents/3p/3p_mod_rett_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_mod_rett_intact.set\nCompleted 197.5 KiB/479.4 KiB (602.4 KiB/s) with 20 file(s) remaining\rCompleted 203.0 KiB/479.4 KiB (611.7 KiB/s) with 20 file(s) remaining\rupload: contents/4p-r/4p-r_severe_rett_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_severe_rett_vagotomized.set\nCompleted 203.0 KiB/479.4 KiB (611.7 KiB/s) with 19 file(s) remaining\rCompleted 208.5 KiB/479.4 KiB (606.4 KiB/s) with 19 file(s) remaining\rupload: contents/4p-r/4p-r_vagotomized.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_vagotomized.set\nCompleted 208.5 KiB/479.4 KiB (606.4 KiB/s) with 18 file(s) remaining\rCompleted 213.1 KiB/479.4 KiB (607.5 KiB/s) with 18 file(s) remaining\rupload: contents/3p/3p_mod_rett_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_mod_rett_vagotomized_DRUG.set\nCompleted 213.1 KiB/479.4 KiB (607.5 KiB/s) with 17 file(s) remaining\rCompleted 218.6 KiB/479.4 KiB (619.2 KiB/s) with 17 file(s) remaining\rupload: contents/4p-r/4p-r_mod_rett_vagotomized_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_mod_rett_vagotomized_DRUG.set\nCompleted 218.6 KiB/479.4 KiB (619.2 KiB/s) with 16 file(s) remaining\rCompleted 224.2 KiB/479.4 KiB (620.7 KiB/s) with 16 file(s) remaining\rupload: contents/4p-r/4p-r_severe_rett_intact.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/4p-r/4p-r_severe_rett_intact.set\nCompleted 224.2 KiB/479.4 KiB (620.7 KiB/s) with 15 file(s) remaining\rCompleted 228.8 KiB/479.4 KiB (628.7 KiB/s) with 15 file(s) remaining\rupload: contents/3p/3p_mod_rett_intact_DRUG.set to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/3p/3p_mod_rett_intact_DRUG.set\nCompleted 228.8 KiB/479.4 KiB (628.7 KiB/s) with 14 file(s) remaining\rCompleted 233.4 KiB/479.4 KiB (638.3 KiB/s) with 14 file(s) remaining\rupload: contents/Matlab_scripts/orbit_tracker.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/Matlab_scripts/orbit_tracker.m\nCompleted 233.4 KiB/479.4 KiB (638.3 KiB/s) with 13 file(s) remaining\rCompleted 238.3 KiB/479.4 KiB (647.1 KiB/s) with 13 file(s) remaining\rupload: contents/Matlab_scripts/rett_figure_script.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/Matlab_scripts/rett_figure_script.m\nCompleted 238.3 KiB/479.4 KiB (647.1 KiB/s) with 12 file(s) remaining\rCompleted 240.5 KiB/479.4 KiB (636.5 KiB/s) with 12 file(s) remaining\rupload: contents/Matlab_scripts/traj_plotter_many.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/Matlab_scripts/traj_plotter_many.m\nCompleted 240.5 KiB/479.4 KiB (636.5 KiB/s) with 11 file(s) remaining\rCompleted 242.0 KiB/479.4 KiB (638.0 KiB/s) with 11 file(s) remaining\rupload: contents/Matlab_scripts/traj_plotter.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/Matlab_scripts/traj_plotter.m\nCompleted 242.0 KiB/479.4 KiB (638.0 KiB/s) with 10 file(s) remaining\rCompleted 244.9 KiB/479.4 KiB (625.6 KiB/s) with 10 file(s) remaining\rupload: contents/README.html to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/README.html\nCompleted 244.9 KiB/479.4 KiB (625.6 KiB/s) with 9 file(s) remaining\rCompleted 248.3 KiB/479.4 KiB (619.9 KiB/s) with 9 file(s) remaining\rupload: contents/Matlab_scripts/set_bar_graphs.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/Matlab_scripts/set_bar_graphs.m\nCompleted 248.3 KiB/479.4 KiB (619.9 KiB/s) with 8 file(s) remaining\rCompleted 254.7 KiB/479.4 KiB (632.7 KiB/s) with 8 file(s) remaining\rupload: contents/clewley/ChangeXPPodeFile.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/clewley/ChangeXPPodeFile.m\nCompleted 254.7 KiB/479.4 KiB (632.7 KiB/s) with 7 file(s) remaining\rCompleted 262.6 KiB/479.4 KiB (632.9 KiB/s) with 7 file(s) remaining\rupload: contents/clewley/ChangeXPPsetFile.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/clewley/ChangeXPPsetFile.m\nCompleted 262.6 KiB/479.4 KiB (632.9 KiB/s) with 6 file(s) remaining\rCompleted 266.4 KiB/479.4 KiB (637.9 KiB/s) with 6 file(s) remaining\rupload: contents/clewley/RunXPP.m to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/clewley/RunXPP.m\nCompleted 266.4 KiB/479.4 KiB (637.9 KiB/s) with 5 file(s) remaining\rCompleted 294.8 KiB/479.4 KiB (688.8 KiB/s) with 5 file(s) remaining\rupload: contents/screenshot1.png to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/screenshot1.png\nCompleted 294.8 KiB/479.4 KiB (688.8 KiB/s) with 4 file(s) remaining\rCompleted 319.7 KiB/479.4 KiB (736.1 KiB/s) with 4 file(s) remaining\rupload: contents/screenshot3.png to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/screenshot3.png\nCompleted 319.7 KiB/479.4 KiB (736.1 KiB/s) with 3 file(s) remaining\rCompleted 348.5 KiB/479.4 KiB (797.1 KiB/s) with 3 file(s) remaining\rupload: contents/screenshot2.png to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/screenshot2.png\nCompleted 348.5 KiB/479.4 KiB (797.1 KiB/s) with 2 file(s) remaining\rCompleted 472.7 KiB/479.4 KiB (1.0 MiB/s) with 2 file(s) remaining  \rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/metadata.rdf\nCompleted 472.7 KiB/479.4 KiB (1.0 MiB/s) with 1 file(s) remaining\rCompleted 479.4 KiB/479.4 KiB (1.0 MiB/s) with 1 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/contents/manifest.xml\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /3p\ncreating group /3p/3p.sedml\ncreating dataset /3p/3p.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-16efa956-224fafc1-fd37-72dc73-14b5ed, chunk_size: (2, 1001)\ncreating dataset /3p/3p.sedml/report, shape: (11, 1001), type: float64\ndataset created, uuid: d-16efa956-224fafc1-4b98-04ac64-a29b4e, chunk_size: (11, 1001)\ncreating group /4p-e\ncreating group /4p-e/4p-e.sedml\ncreating dataset /4p-e/4p-e.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-16efa956-224fafc1-6908-47138c-70f2b8, chunk_size: (2, 1001)\ncreating dataset /4p-e/4p-e.sedml/report, shape: (14, 1001), type: float64\ndataset created, uuid: d-16efa956-224fafc1-b050-f17898-64a38a, chunk_size: (14, 1001)\ncreating group /4p-r\ncreating group /4p-r/4p-r.sedml\ncreating dataset /4p-r/4p-r.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-16efa956-224fafc1-a2fc-2c3a85-ddd1c6, chunk_size: (2, 1001)\ncreating dataset /4p-r/4p-r.sedml/report, shape: (14, 1001), type: float64\ndataset created, uuid: d-16efa956-224fafc1-c39f-94a100-709966, chunk_size: (14, 1001)\ncreating attribute combineArchiveLocation in /3p\ncreating attribute uri in /3p\ncreating attribute combineArchiveLocation in /3p/3p.sedml\ncreating attribute uri in /3p/3p.sedml\ncreating attribute _type in /3p/3p.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /3p/3p.sedml/plot\ncreating attribute sedmlDataSetIds in /3p/3p.sedml/plot\ncreating attribute sedmlDataSetLabels in /3p/3p.sedml/plot\ncreating attribute sedmlDataSetNames in /3p/3p.sedml/plot\ncreating attribute sedmlDataSetShapes in /3p/3p.sedml/plot\ncreating attribute sedmlId in /3p/3p.sedml/plot\ncreating attribute uri in /3p/3p.sedml/plot\ncreating attribute _type in /3p/3p.sedml/report\ncreating attribute sedmlDataSetDataTypes in /3p/3p.sedml/report\ncreating attribute sedmlDataSetIds in /3p/3p.sedml/report\ncreating attribute sedmlDataSetLabels in /3p/3p.sedml/report\ncreating attribute sedmlDataSetNames in /3p/3p.sedml/report\ncreating attribute sedmlDataSetShapes in /3p/3p.sedml/report\ncreating attribute sedmlId in /3p/3p.sedml/report\ncreating attribute sedmlName in /3p/3p.sedml/report\ncreating attribute uri in /3p/3p.sedml/report\ncreating attribute combineArchiveLocation in /4p-e\ncreating attribute uri in /4p-e\ncreating attribute combineArchiveLocation in /4p-e/4p-e.sedml\ncreating attribute uri in /4p-e/4p-e.sedml\ncreating attribute _type in /4p-e/4p-e.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /4p-e/4p-e.sedml/plot\ncreating attribute sedmlDataSetIds in /4p-e/4p-e.sedml/plot\ncreating attribute sedmlDataSetLabels in /4p-e/4p-e.sedml/plot\ncreating attribute sedmlDataSetNames in /4p-e/4p-e.sedml/plot\ncreating attribute sedmlDataSetShapes in /4p-e/4p-e.sedml/plot\ncreating attribute sedmlId in /4p-e/4p-e.sedml/plot\ncreating attribute uri in /4p-e/4p-e.sedml/plot\ncreating attribute _type in /4p-e/4p-e.sedml/report\ncreating attribute sedmlDataSetDataTypes in /4p-e/4p-e.sedml/report\ncreating attribute sedmlDataSetIds in /4p-e/4p-e.sedml/report\ncreating attribute sedmlDataSetLabels in /4p-e/4p-e.sedml/report\ncreating attribute sedmlDataSetNames in /4p-e/4p-e.sedml/report\ncreating attribute sedmlDataSetShapes in /4p-e/4p-e.sedml/report\ncreating attribute sedmlId in /4p-e/4p-e.sedml/report\ncreating attribute sedmlName in /4p-e/4p-e.sedml/report\ncreating attribute uri in /4p-e/4p-e.sedml/report\ncreating attribute combineArchiveLocation in /4p-r\ncreating attribute uri in /4p-r\ncreating attribute combineArchiveLocation in /4p-r/4p-r.sedml\ncreating attribute uri in /4p-r/4p-r.sedml\ncreating attribute _type in /4p-r/4p-r.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /4p-r/4p-r.sedml/plot\ncreating attribute sedmlDataSetIds in /4p-r/4p-r.sedml/plot\ncreating attribute sedmlDataSetLabels in /4p-r/4p-r.sedml/plot\ncreating attribute sedmlDataSetNames in /4p-r/4p-r.sedml/plot\ncreating attribute sedmlDataSetShapes in /4p-r/4p-r.sedml/plot\ncreating attribute sedmlId in /4p-r/4p-r.sedml/plot\ncreating attribute uri in /4p-r/4p-r.sedml/plot\ncreating attribute _type in /4p-r/4p-r.sedml/report\ncreating attribute sedmlDataSetDataTypes in /4p-r/4p-r.sedml/report\ncreating attribute sedmlDataSetIds in /4p-r/4p-r.sedml/report\ncreating attribute sedmlDataSetLabels in /4p-r/4p-r.sedml/report\ncreating attribute sedmlDataSetNames in /4p-r/4p-r.sedml/report\ncreating attribute sedmlDataSetShapes in /4p-r/4p-r.sedml/report\ncreating attribute sedmlId in /4p-r/4p-r.sedml/report\ncreating attribute sedmlName in /4p-r/4p-r.sedml/report\ncreating attribute uri in /4p-r/4p-r.sedml/report\ncreate_links: /\ngot link: 3p\ngot link: 4p-e\ngot link: 4p-r\ncreate_links: /3p\ngot link: 3p.sedml\ncreate_links: /3p/3p.sedml\ngot link: plot\ngot link: report\ncreate_links: /4p-e\ngot link: 4p-e.sedml\ncreate_links: /4p-e/4p-e.sedml\ngot link: plot\ngot link: report\ncreate_links: /4p-r\ngot link: 4p-r.sedml\ncreate_links: /4p-r/4p-r.sedml\ngot link: plot\ngot link: report\nwrite_dataset src: /3p/3p.sedml/plot to tgt: /3p/3p.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /3p/3p.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /3p/3p.sedml/plot\nwrite_dataset src: /3p/3p.sedml/report to tgt: /3p/3p.sedml/report, shape: (11, 1001), type: float64\niterating over chunks for /3p/3p.sedml/report\nwriting dataset data for slice: (slice(0, 11, 1), slice(0, 1001, 1))\ndone with dataload for /3p/3p.sedml/report\nwrite_dataset src: /4p-e/4p-e.sedml/plot to tgt: /4p-e/4p-e.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /4p-e/4p-e.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /4p-e/4p-e.sedml/plot\nwrite_dataset src: /4p-e/4p-e.sedml/report to tgt: /4p-e/4p-e.sedml/report, shape: (14, 1001), type: float64\niterating over chunks for /4p-e/4p-e.sedml/report\nwriting dataset data for slice: (slice(0, 14, 1), slice(0, 1001, 1))\ndone with dataload for /4p-e/4p-e.sedml/report\nwrite_dataset src: /4p-r/4p-r.sedml/plot to tgt: /4p-r/4p-r.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /4p-r/4p-r.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /4p-r/4p-r.sedml/plot\nwrite_dataset src: /4p-r/4p-r.sedml/report to tgt: /4p-r/4p-r.sedml/report, shape: (14, 1001), type: float64\niterating over chunks for /4p-r/4p-r.sedml/report\nwriting dataset data for slice: (slice(0, 14, 1), slice(0, 1001, 1))\ndone with dataload for /4p-r/4p-r.sedml/report\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/621d42c5d8a14a834cbf3fbe\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 85%)\n  adding: outputs/4p-r/ (stored 0%)\n  adding: outputs/4p-r/4p-r.sedml/ (stored 0%)\n  adding: outputs/4p-r/4p-r.sedml/plot.pdf (deflated 23%)\n  adding: outputs/3p/ (stored 0%)\n  adding: outputs/3p/3p.sedml/ (stored 0%)\n  adding: outputs/3p/3p.sedml/plot.pdf (deflated 23%)\n  adding: outputs/4p-e/ (stored 0%)\n  adding: outputs/4p-e/4p-e.sedml/ (stored 0%)\n  adding: outputs/4p-e/4p-e.sedml/plot.pdf (deflated 18%)\n  adding: outputs/reports.h5 (deflated 16%)\n  adding: rawLog.txt (deflated 88%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 10.3 KiB/417.4 KiB (170.7 KiB/s) with 6 file(s) remaining\rupload: outputs/3p/3p.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/outputs/3p/3p.sedml/plot.pdf\nCompleted 10.3 KiB/417.4 KiB (170.7 KiB/s) with 5 file(s) remaining\rCompleted 266.3 KiB/417.4 KiB (3.5 MiB/s) with 5 file(s) remaining \rCompleted 279.1 KiB/417.4 KiB (2.7 MiB/s) with 5 file(s) remaining \rupload: outputs/4p-e/4p-e.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/outputs/4p-e/4p-e.sedml/plot.pdf\nCompleted 279.1 KiB/417.4 KiB (2.7 MiB/s) with 4 file(s) remaining\rCompleted 289.5 KiB/417.4 KiB (2.7 MiB/s) with 4 file(s) remaining\rupload: outputs/4p-r/4p-r.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/outputs/4p-r/4p-r.sedml/plot.pdf\nCompleted 289.5 KiB/417.4 KiB (2.7 MiB/s) with 3 file(s) remaining\rCompleted 363.6 KiB/417.4 KiB (2.6 MiB/s) with 3 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/output.zip\nCompleted 363.6 KiB/417.4 KiB (2.6 MiB/s) with 2 file(s) remaining\rCompleted 389.5 KiB/417.4 KiB (2.8 MiB/s) with 2 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/outputs/plots.zip\nCompleted 389.5 KiB/417.4 KiB (2.8 MiB/s) with 1 file(s) remaining\rCompleted 417.4 KiB/417.4 KiB (2.9 MiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/rawLog.txt\nCompleted 256.0 KiB/354.8 KiB (7.0 MiB/s) with 1 file(s) remaining\rCompleted 354.8 KiB/354.8 KiB (3.0 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/outputs/reports.h5\nCompleted 6.7 KiB/6.7 KiB (111.7 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/621d42c5d8a14a834cbf3fbe/outputs/log.yml\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess and upload the outputs of the simulation run ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","skipReason":null,"exception":null,"status":"SUCCEEDED"}