{"sedDocuments":[{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_CAI"},{"status":"SUCCEEDED","id":"data_set_P"},{"status":"SUCCEEDED","id":"data_set_P2"},{"status":"SUCCEEDED","id":"data_set_Q"},{"status":"SUCCEEDED","id":"data_set_Q2"},{"status":"SUCCEEDED","id":"data_set_Q3"},{"status":"SUCCEEDED","id":"data_set_V"},{"status":"SUCCEEDED","id":"data_set_W"}],"duration":0.123073,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.196032,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"100000.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"0.1","key":"dt"},{"value":"0.0","key":"t0"},{"value":"1000","key":"njmp"}],"algorithm":"KISAO_0000032","duration":6.912217,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":7.376035,"output":"Archive contains 3 SED-ML documents with 3 models, 3 simulations, 3 tasks, 3 reports, and 3 plots:\r\n  ACCPersistentSpiking-Ratte2018.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 9 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  ACCPersistentSpiking-Ratte2018_ca.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 9 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  ACCPersistentSpiking-Ratte2018_v.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 9 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n\r\nExecuting SED-ML file 1: ACCPersistentSpiking-Ratte2018.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"ACCPersistentSpiking-Ratte2018.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_CAI"},{"status":"SUCCEEDED","id":"data_set_P"},{"status":"SUCCEEDED","id":"data_set_P2"},{"status":"SUCCEEDED","id":"data_set_Q"},{"status":"SUCCEEDED","id":"data_set_Q2"},{"status":"SUCCEEDED","id":"data_set_Q3"},{"status":"SUCCEEDED","id":"data_set_V"},{"status":"SUCCEEDED","id":"data_set_W"}],"duration":0.112954,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.173706,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"4000.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"0.1","key":"dt"},{"value":"0.0","key":"t0"},{"value":"40","key":"njmp"}],"algorithm":"KISAO_0000032","duration":0.379699,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":0.8254,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 2: ACCPersistentSpiking-Ratte2018_ca.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"ACCPersistentSpiking-Ratte2018_ca.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_CAI"},{"status":"SUCCEEDED","id":"data_set_P"},{"status":"SUCCEEDED","id":"data_set_P2"},{"status":"SUCCEEDED","id":"data_set_Q"},{"status":"SUCCEEDED","id":"data_set_Q2"},{"status":"SUCCEEDED","id":"data_set_Q3"},{"status":"SUCCEEDED","id":"data_set_V"},{"status":"SUCCEEDED","id":"data_set_W"}],"duration":0.110618,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.15708,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"4000.0","key":"total"},{"value":"rungekutta","key":"meth"},{"value":"0.1","key":"dt"},{"value":"0.0","key":"t0"},{"value":"40","key":"njmp"}],"algorithm":"KISAO_0000032","duration":0.345552,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":0.768023,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 3: ACCPersistentSpiking-Ratte2018_v.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"ACCPersistentSpiking-Ratte2018_v.sedml"}],"duration":9.624829,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    491      0 --:--:-- --:--:-- --:--:--   492\n\r100  161k  100  161k    0     0   407k      0 --:--:-- --:--:-- --:--:--  407k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive has warnings.\r\n  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 2 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 3 SED documents:\n  SED documents (3):\n    Succeeded: 3\n    Skipped: 0\n    Failed: 0\n  Tasks (3):\n    Succeeded: 3\n    Skipped: 0\n    Failed: 0\n  Outputs (6):\n    Succeeded: 6\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/readme.html    \n  inflating: contents/ACCPersistentSpiking-Ratte2018.ode  \n  inflating: contents/ACCPersistentSpiking-Ratte2018_v.ode  \n  inflating: contents/ACCPersistentSpiking-Ratte2018_ca.ode  \n  inflating: contents/ACCPersistentSpiking-Ratte2018.sedml  \n  inflating: contents/ACCPersistentSpiking-Ratte2018_ca.sedml  \n  inflating: contents/ACCPersistentSpiking-Ratte2018_v.sedml  \n  inflating: contents/metadata.rdf   \n  inflating: contents/screenshot.png  \n  inflating: contents/screenshot1.png  \n  inflating: contents/screenshot2.png  \n  inflating: contents/manifest.xml   \nCompleted 2.9 KiB/222.8 KiB (47.9 KiB/s) with 12 file(s) remaining\rupload: contents/ACCPersistentSpiking-Ratte2018.ode to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/contents/ACCPersistentSpiking-Ratte2018.ode\nCompleted 2.9 KiB/222.8 KiB (47.9 KiB/s) with 11 file(s) remaining\rCompleted 5.8 KiB/222.8 KiB (55.7 KiB/s) with 11 file(s) remaining\rupload: contents/ACCPersistentSpiking-Ratte2018_ca.ode to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/contents/ACCPersistentSpiking-Ratte2018_ca.ode\nCompleted 5.8 KiB/222.8 KiB (55.7 KiB/s) with 10 file(s) remaining\rCompleted 13.8 KiB/222.8 KiB (123.9 KiB/s) with 10 file(s) remaining\rupload: contents/ACCPersistentSpiking-Ratte2018_ca.sedml to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/contents/ACCPersistentSpiking-Ratte2018_ca.sedml\nCompleted 13.8 KiB/222.8 KiB (123.9 KiB/s) with 9 file(s) remaining\rCompleted 15.2 KiB/222.8 KiB (129.7 KiB/s) with 9 file(s) remaining\rupload: contents/readme.html to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/contents/readme.html\nCompleted 15.2 KiB/222.8 KiB (129.7 KiB/s) with 8 file(s) remaining\rCompleted 16.7 KiB/222.8 KiB (139.4 KiB/s) with 8 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/contents/manifest.xml\nCompleted 16.7 KiB/222.8 KiB (139.4 KiB/s) with 7 file(s) remaining\rCompleted 129.2 KiB/222.8 KiB (894.2 KiB/s) with 7 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/contents/metadata.rdf\nCompleted 129.2 KiB/222.8 KiB (894.2 KiB/s) with 6 file(s) remaining\rCompleted 153.8 KiB/222.8 KiB (1.0 MiB/s) with 6 file(s) remaining  \rupload: contents/screenshot1.png to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/contents/screenshot1.png\nCompleted 153.8 KiB/222.8 KiB (1.0 MiB/s) with 5 file(s) remaining\rCompleted 174.3 KiB/222.8 KiB (1.1 MiB/s) with 5 file(s) remaining\rupload: contents/screenshot2.png to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/contents/screenshot2.png\nCompleted 174.3 KiB/222.8 KiB (1.1 MiB/s) with 4 file(s) remaining\rCompleted 182.3 KiB/222.8 KiB (1.2 MiB/s) with 4 file(s) remaining\rupload: contents/ACCPersistentSpiking-Ratte2018.sedml to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/contents/ACCPersistentSpiking-Ratte2018.sedml\nCompleted 182.3 KiB/222.8 KiB (1.2 MiB/s) with 3 file(s) remaining\rCompleted 211.9 KiB/222.8 KiB (1.3 MiB/s) with 3 file(s) remaining\rupload: contents/screenshot.png to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/contents/screenshot.png\nCompleted 211.9 KiB/222.8 KiB (1.3 MiB/s) with 2 file(s) remaining\rCompleted 214.7 KiB/222.8 KiB (1.3 MiB/s) with 2 file(s) remaining\rupload: contents/ACCPersistentSpiking-Ratte2018_v.ode to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/contents/ACCPersistentSpiking-Ratte2018_v.ode\nCompleted 214.7 KiB/222.8 KiB (1.3 MiB/s) with 1 file(s) remaining\rCompleted 222.8 KiB/222.8 KiB (1.3 MiB/s) with 1 file(s) remaining\rupload: contents/ACCPersistentSpiking-Ratte2018_v.sedml to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/contents/ACCPersistentSpiking-Ratte2018_v.sedml\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /ACCPersistentSpiking-Ratte2018.sedml\ncreating dataset /ACCPersistentSpiking-Ratte2018.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-59e6c39a-e50ab0f0-9377-a90611-96182e, chunk_size: (2, 1001)\ncreating dataset /ACCPersistentSpiking-Ratte2018.sedml/report, shape: (9, 1001), type: float64\ndataset created, uuid: d-59e6c39a-e50ab0f0-acdf-de0c17-85693f, chunk_size: (9, 1001)\ncreating group /ACCPersistentSpiking-Ratte2018_ca.sedml\ncreating dataset /ACCPersistentSpiking-Ratte2018_ca.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-59e6c39a-e50ab0f0-9c26-743ff0-7290f1, chunk_size: (2, 1001)\ncreating dataset /ACCPersistentSpiking-Ratte2018_ca.sedml/report, shape: (9, 1001), type: float64\ndataset created, uuid: d-59e6c39a-e50ab0f0-fc74-6baf71-80c07a, chunk_size: (9, 1001)\ncreating group /ACCPersistentSpiking-Ratte2018_v.sedml\ncreating dataset /ACCPersistentSpiking-Ratte2018_v.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-59e6c39a-e50ab0f0-17df-8ca9a3-164b52, chunk_size: (2, 1001)\ncreating dataset /ACCPersistentSpiking-Ratte2018_v.sedml/report, shape: (9, 1001), type: float64\ndataset created, uuid: d-59e6c39a-e50ab0f0-1365-3af8c3-edb13e, chunk_size: (9, 1001)\ncreating attribute combineArchiveLocation in /ACCPersistentSpiking-Ratte2018.sedml\ncreating attribute uri in /ACCPersistentSpiking-Ratte2018.sedml\ncreating attribute _type in /ACCPersistentSpiking-Ratte2018.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /ACCPersistentSpiking-Ratte2018.sedml/plot\ncreating attribute sedmlDataSetIds in /ACCPersistentSpiking-Ratte2018.sedml/plot\ncreating attribute sedmlDataSetLabels in /ACCPersistentSpiking-Ratte2018.sedml/plot\ncreating attribute sedmlDataSetNames in /ACCPersistentSpiking-Ratte2018.sedml/plot\ncreating attribute sedmlDataSetShapes in /ACCPersistentSpiking-Ratte2018.sedml/plot\ncreating attribute sedmlId in /ACCPersistentSpiking-Ratte2018.sedml/plot\ncreating attribute uri in /ACCPersistentSpiking-Ratte2018.sedml/plot\ncreating attribute _type in /ACCPersistentSpiking-Ratte2018.sedml/report\ncreating attribute sedmlDataSetDataTypes in /ACCPersistentSpiking-Ratte2018.sedml/report\ncreating attribute sedmlDataSetIds in /ACCPersistentSpiking-Ratte2018.sedml/report\ncreating attribute sedmlDataSetLabels in /ACCPersistentSpiking-Ratte2018.sedml/report\ncreating attribute sedmlDataSetNames in /ACCPersistentSpiking-Ratte2018.sedml/report\ncreating attribute sedmlDataSetShapes in /ACCPersistentSpiking-Ratte2018.sedml/report\ncreating attribute sedmlId in /ACCPersistentSpiking-Ratte2018.sedml/report\ncreating attribute sedmlName in /ACCPersistentSpiking-Ratte2018.sedml/report\ncreating attribute uri in /ACCPersistentSpiking-Ratte2018.sedml/report\ncreating attribute combineArchiveLocation in /ACCPersistentSpiking-Ratte2018_ca.sedml\ncreating attribute uri in /ACCPersistentSpiking-Ratte2018_ca.sedml\ncreating attribute _type in /ACCPersistentSpiking-Ratte2018_ca.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /ACCPersistentSpiking-Ratte2018_ca.sedml/plot\ncreating attribute sedmlDataSetIds in /ACCPersistentSpiking-Ratte2018_ca.sedml/plot\ncreating attribute sedmlDataSetLabels in /ACCPersistentSpiking-Ratte2018_ca.sedml/plot\ncreating attribute sedmlDataSetNames in /ACCPersistentSpiking-Ratte2018_ca.sedml/plot\ncreating attribute sedmlDataSetShapes in /ACCPersistentSpiking-Ratte2018_ca.sedml/plot\ncreating attribute sedmlId in /ACCPersistentSpiking-Ratte2018_ca.sedml/plot\ncreating attribute uri in /ACCPersistentSpiking-Ratte2018_ca.sedml/plot\ncreating attribute _type in /ACCPersistentSpiking-Ratte2018_ca.sedml/report\ncreating attribute sedmlDataSetDataTypes in /ACCPersistentSpiking-Ratte2018_ca.sedml/report\ncreating attribute sedmlDataSetIds in /ACCPersistentSpiking-Ratte2018_ca.sedml/report\ncreating attribute sedmlDataSetLabels in /ACCPersistentSpiking-Ratte2018_ca.sedml/report\ncreating attribute sedmlDataSetNames in /ACCPersistentSpiking-Ratte2018_ca.sedml/report\ncreating attribute sedmlDataSetShapes in /ACCPersistentSpiking-Ratte2018_ca.sedml/report\ncreating attribute sedmlId in /ACCPersistentSpiking-Ratte2018_ca.sedml/report\ncreating attribute sedmlName in /ACCPersistentSpiking-Ratte2018_ca.sedml/report\ncreating attribute uri in /ACCPersistentSpiking-Ratte2018_ca.sedml/report\ncreating attribute combineArchiveLocation in /ACCPersistentSpiking-Ratte2018_v.sedml\ncreating attribute uri in /ACCPersistentSpiking-Ratte2018_v.sedml\ncreating attribute _type in /ACCPersistentSpiking-Ratte2018_v.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /ACCPersistentSpiking-Ratte2018_v.sedml/plot\ncreating attribute sedmlDataSetIds in /ACCPersistentSpiking-Ratte2018_v.sedml/plot\ncreating attribute sedmlDataSetLabels in /ACCPersistentSpiking-Ratte2018_v.sedml/plot\ncreating attribute sedmlDataSetNames in /ACCPersistentSpiking-Ratte2018_v.sedml/plot\ncreating attribute sedmlDataSetShapes in /ACCPersistentSpiking-Ratte2018_v.sedml/plot\ncreating attribute sedmlId in /ACCPersistentSpiking-Ratte2018_v.sedml/plot\ncreating attribute uri in /ACCPersistentSpiking-Ratte2018_v.sedml/plot\ncreating attribute _type in /ACCPersistentSpiking-Ratte2018_v.sedml/report\ncreating attribute sedmlDataSetDataTypes in /ACCPersistentSpiking-Ratte2018_v.sedml/report\ncreating attribute sedmlDataSetIds in /ACCPersistentSpiking-Ratte2018_v.sedml/report\ncreating attribute sedmlDataSetLabels in /ACCPersistentSpiking-Ratte2018_v.sedml/report\ncreating attribute sedmlDataSetNames in /ACCPersistentSpiking-Ratte2018_v.sedml/report\ncreating attribute sedmlDataSetShapes in /ACCPersistentSpiking-Ratte2018_v.sedml/report\ncreating attribute sedmlId in /ACCPersistentSpiking-Ratte2018_v.sedml/report\ncreating attribute sedmlName in /ACCPersistentSpiking-Ratte2018_v.sedml/report\ncreating attribute uri in /ACCPersistentSpiking-Ratte2018_v.sedml/report\ncreate_links: /\ngot link: ACCPersistentSpiking-Ratte2018.sedml\ngot link: ACCPersistentSpiking-Ratte2018_ca.sedml\ngot link: ACCPersistentSpiking-Ratte2018_v.sedml\ncreate_links: /ACCPersistentSpiking-Ratte2018.sedml\ngot link: plot\ngot link: report\ncreate_links: /ACCPersistentSpiking-Ratte2018_ca.sedml\ngot link: plot\ngot link: report\ncreate_links: /ACCPersistentSpiking-Ratte2018_v.sedml\ngot link: plot\ngot link: report\nwrite_dataset src: /ACCPersistentSpiking-Ratte2018.sedml/plot to tgt: /ACCPersistentSpiking-Ratte2018.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /ACCPersistentSpiking-Ratte2018.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /ACCPersistentSpiking-Ratte2018.sedml/plot\nwrite_dataset src: /ACCPersistentSpiking-Ratte2018.sedml/report to tgt: /ACCPersistentSpiking-Ratte2018.sedml/report, shape: (9, 1001), type: float64\niterating over chunks for /ACCPersistentSpiking-Ratte2018.sedml/report\nwriting dataset data for slice: (slice(0, 9, 1), slice(0, 1001, 1))\ndone with dataload for /ACCPersistentSpiking-Ratte2018.sedml/report\nwrite_dataset src: /ACCPersistentSpiking-Ratte2018_ca.sedml/plot to tgt: /ACCPersistentSpiking-Ratte2018_ca.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /ACCPersistentSpiking-Ratte2018_ca.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /ACCPersistentSpiking-Ratte2018_ca.sedml/plot\nwrite_dataset src: /ACCPersistentSpiking-Ratte2018_ca.sedml/report to tgt: /ACCPersistentSpiking-Ratte2018_ca.sedml/report, shape: (9, 1001), type: float64\niterating over chunks for /ACCPersistentSpiking-Ratte2018_ca.sedml/report\nwriting dataset data for slice: (slice(0, 9, 1), slice(0, 1001, 1))\ndone with dataload for /ACCPersistentSpiking-Ratte2018_ca.sedml/report\nwrite_dataset src: /ACCPersistentSpiking-Ratte2018_v.sedml/plot to tgt: /ACCPersistentSpiking-Ratte2018_v.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /ACCPersistentSpiking-Ratte2018_v.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /ACCPersistentSpiking-Ratte2018_v.sedml/plot\nwrite_dataset src: /ACCPersistentSpiking-Ratte2018_v.sedml/report to tgt: /ACCPersistentSpiking-Ratte2018_v.sedml/report, shape: (9, 1001), type: float64\niterating over chunks for /ACCPersistentSpiking-Ratte2018_v.sedml/report\nwriting dataset data for slice: (slice(0, 9, 1), slice(0, 1001, 1))\ndone with dataload for /ACCPersistentSpiking-Ratte2018_v.sedml/report\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/621d42c2d8a14a834cbf3f57\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 84%)\n  adding: outputs/ACCPersistentSpiking-Ratte2018_ca.sedml/ (stored 0%)\n  adding: outputs/ACCPersistentSpiking-Ratte2018_ca.sedml/plot.pdf (deflated 30%)\n  adding: outputs/ACCPersistentSpiking-Ratte2018_v.sedml/ (stored 0%)\n  adding: outputs/ACCPersistentSpiking-Ratte2018_v.sedml/plot.pdf (deflated 25%)\n  adding: outputs/ACCPersistentSpiking-Ratte2018.sedml/ (stored 0%)\n  adding: outputs/ACCPersistentSpiking-Ratte2018.sedml/plot.pdf (deflated 27%)\n  adding: outputs/reports.h5 (deflated 26%)\n  adding: rawLog.txt (deflated 87%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 9.2 KiB/255.8 KiB (90.6 KiB/s) with 6 file(s) remaining\rupload: outputs/ACCPersistentSpiking-Ratte2018_v.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/outputs/ACCPersistentSpiking-Ratte2018_v.sedml/plot.pdf\nCompleted 9.2 KiB/255.8 KiB (90.6 KiB/s) with 5 file(s) remaining\rCompleted 205.7 KiB/255.8 KiB (1.9 MiB/s) with 5 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/output.zip\nCompleted 205.7 KiB/255.8 KiB (1.9 MiB/s) with 4 file(s) remaining\rCompleted 214.5 KiB/255.8 KiB (2.0 MiB/s) with 4 file(s) remaining\rupload: outputs/ACCPersistentSpiking-Ratte2018.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/outputs/ACCPersistentSpiking-Ratte2018.sedml/plot.pdf\nCompleted 214.5 KiB/255.8 KiB (2.0 MiB/s) with 3 file(s) remaining\rCompleted 222.4 KiB/255.8 KiB (2.0 MiB/s) with 3 file(s) remaining\rupload: outputs/ACCPersistentSpiking-Ratte2018_ca.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/outputs/ACCPersistentSpiking-Ratte2018_ca.sedml/plot.pdf\nCompleted 222.4 KiB/255.8 KiB (2.0 MiB/s) with 2 file(s) remaining\rCompleted 240.9 KiB/255.8 KiB (2.1 MiB/s) with 2 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/outputs/plots.zip\nCompleted 240.9 KiB/255.8 KiB (2.1 MiB/s) with 1 file(s) remaining\rCompleted 255.8 KiB/255.8 KiB (1.9 MiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/rawLog.txt\nCompleted 233.4 KiB/233.4 KiB (2.7 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/outputs/reports.h5\nCompleted 6.4 KiB/6.4 KiB (110.7 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/621d42c2d8a14a834cbf3f57/outputs/log.yml\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","skipReason":null,"exception":null,"status":"SUCCEEDED"}