{"sedDocuments":[{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_V"},{"status":"SUCCEEDED","id":"data_set_W"}],"duration":0.080165,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"}],"tasks":[{"simulatorDetails":[{"value":"euler","key":"meth"},{"value":"100.0","key":"total"},{"value":"0.05","key":"dt"},{"value":"0.0","key":"t0"},{"value":"2","key":"njmp"}],"algorithm":"KISAO_0000030","duration":0.104347,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":0.269678,"output":"Archive contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 0 plots:\r\n  XPP/aEIF.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 3 data sets\r\n\r\nExecuting SED-ML file 1: XPP/aEIF.sedml ...\r\n  Found 1 tasks and 1 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 1 outputs ...\r\n      Generating output 1: `report` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"XPP/aEIF.sedml"}],"duration":0.75762,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   138  100   138    0     0    464      0 --:--:-- --:--:-- --:--:--   464\n\r100 19.8M  100 19.8M    0     0  42.5M      0 --:--:-- --:--:-- --:--:-- 42.5M\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive has warnings.\r\n  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 1 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n  SED documents (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Tasks (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Outputs (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/trajectory_increase_noise.m  \n  inflating: contents/matlabserver.m  \n  inflating: contents/K.m            \n  inflating: contents/ramp2.m        \n  inflating: contents/v1-v2.mw       \n  inflating: contents/psth.m         \n  inflating: contents/test_prob.m    \n  inflating: contents/README.md      \n  inflating: contents/hist2.m        \n  inflating: contents/dendritenodendrite.m  \n  inflating: contents/test_prob_par.m  \n  inflating: contents/SNRprocessing.m  \n  inflating: contents/aeif.m         \n  inflating: contents/sigma_opt.m    \n  inflating: contents/trajectory.m   \n  inflating: contents/psthprobnew.m  \n  inflating: contents/psthsigma.m    \n  inflating: contents/newaEIF_parameters.xls  \n  inflating: contents/parsave.m      \n  inflating: contents/psthhold.m     \n  inflating: contents/hist_v.m       \n  inflating: contents/ramp_test.m    \n  inflating: contents/trajectory_rand_noise.eps  \n  inflating: contents/trajectory_increase_noise.fig  \n  inflating: contents/trajectory_rand_noise.m  \n  inflating: contents/psthprob.m     \n  inflating: contents/ramp.m         \n  inflating: contents/ramp2 (rough method).m  \n  inflating: contents/FI.m           \n  inflating: contents/nodendrite.m   \n  inflating: contents/trajectory_rand_noise.fig  \n  inflating: contents/test_orn_par.m  \n  inflating: contents/sevencells.m   \n  inflating: contents/test_orn.m     \n  inflating: contents/dendrite.m     \n  inflating: contents/par.txt        \n  inflating: contents/deShutter-Bower/DSB94_play/DS2M0Purk_play.hoc  \n  inflating: contents/deShutter-Bower/DSB94_play/Purk2M0.nrn  \n  inflating: contents/deShutter-Bower/DSB94_play/CaT.mod  \n  inflating: contents/deShutter-Bower/DSB94_play/DS2M0Purk.hoc  \n  inflating: contents/deShutter-Bower/DSB94_play/NaP.mod  \n  inflating: contents/deShutter-Bower/DSB94_play/KA.mod  \n  inflating: contents/deShutter-Bower/DSB94_play/Kdr.mod  \n  inflating: contents/deShutter-Bower/DSB94_play/NaF.mod  \n  inflating: contents/deShutter-Bower/DSB94_play/Leak.mod  \n  inflating: contents/deShutter-Bower/DSB94_play/KC.mod  \n  inflating: contents/deShutter-Bower/DSB94_play/CaP.mod  \n  inflating: contents/deShutter-Bower/DSB94_play/Kh2.mod  \n  inflating: contents/deShutter-Bower/DSB94_play/Instructions.txt  \n  inflating: contents/deShutter-Bower/DSB94_play/CalciumP.mod  \n  inflating: contents/deShutter-Bower/DSB94_play/KMnew2.mod  \n  inflating: contents/deShutter-Bower/DSB94_play/Kh1.mod  \n  inflating: contents/deShutter-Bower/DSB94_play/K2.mod  \n  inflating: contents/deShutter-Bower/DSB94_play/DS2M0Purk_play_loop.hoc  \n  inflating: contents/deShutter-Bower/DSB94_play/input_increasing_noise.txt  \n  inflating: contents/XPP/aEIF.ode   \n  inflating: contents/XPP/aEIF.ode.auto  \n  inflating: contents/XPP/aEIF_bif.pdf  \n  inflating: contents/XPP/cell1/wb-150.mat  \n  inflating: contents/XPP/cell1/curve.dat  \n  inflating: contents/XPP/cell1/-200-2.dat  \n  inflating: contents/XPP/cell1/BIF-150.auto  \n  inflating: contents/XPP/cell1/vb-150.mat  \n  inflating: contents/XPP/cell1/vbwb-100.mat  \n  inflating: contents/XPP/cell1/vbwb-150.mat  \n  inflating: contents/XPP/cell1/vb-100.mat  \n  inflating: contents/XPP/cell1/BIF-150.eps  \n  inflating: contents/XPP/cell1/-200-1.dat  \n  inflating: contents/XPP/cell1/vbwb-200.mat  \n  inflating: contents/XPP/cell1/bassin-150.dat  \n  inflating: contents/XPP/cell1/wb-200.mat  \n  inflating: contents/XPP/cell1/wb-100.mat  \n  inflating: contents/XPP/cell1/vb-200.mat  \n  inflating: contents/XPP/cell1/-100-2.dat  \n  inflating: contents/XPP/cell1/-100-1.dat  \n  inflating: contents/XPP/Basin of attraction/aEIF_bif_diagrams.mat  \n  inflating: contents/XPP/Basin of attraction/bassin_trajectories.mat  \n  inflating: contents/XPP/Basin of attraction/aEIF_bif_diagrams.m  \n  inflating: contents/XPP/Basin of attraction/Basin_trajectory.m  \n  inflating: contents/XPP/Basin of attraction/aEIF_bif_bassin.fig  \n  inflating: contents/XPP/Basin of attraction/-150/V_w_150.fig  \n  inflating: contents/XPP/Basin of attraction/-150/V_w_150.dat  \n  inflating: contents/XPP/Basin of attraction/-100/V_w_100.fig  \n  inflating: contents/XPP/Basin of attraction/-100/V_w_100.dat  \n  inflating: contents/XPP/Basin of attraction/-200/V_w_200.fig  \n  inflating: contents/XPP/Basin of attraction/-200/V_w_200.dat  \n  inflating: contents/XPP/Basin of attraction/-250/wb-250.mat  \n  inflating: contents/XPP/Basin of attraction/-250/250_1.dat  \n  inflating: contents/XPP/Basin of attraction/-250/vb-250.mat  \n  inflating: contents/XPP/Basin of attraction/-250/V_w_250.mat  \n  inflating: contents/XPP/Basin of attraction/-250/250_2.dat  \n  inflating: contents/XPP/aEIF.sedml  \n  inflating: contents/metadata.rdf   \n  inflating: contents/article-figures/PMC4991839/pcbi.1005000.g001.jpg  \n  inflating: contents/article-figures/PMC4991839/pcbi.1005000.g002.jpg  \n  inflating: contents/article-figures/PMC4991839/pcbi.1005000.g003.jpg  \n  inflating: contents/article-figures/PMC4991839/pcbi.1005000.g004.jpg  \n  inflating: contents/article-figures/PMC4991839/pcbi.1005000.g005.jpg  \n  inflating: contents/article-figures/PMC4991839/pcbi.1005000.g006.jpg  \n  inflating: contents/article-figures/PMC4991839/pcbi.1005000.g007.jpg  \n  inflating: contents/trajectory_increase_noise.jpg  \n  inflating: contents/trajectory_rand_noise.jpg  \n  inflating: contents/trajectory_rand_noise.png  \n  inflating: contents/deShutter-Bower/DSB94_play/Imean=-160pA.jpg  \n  inflating: contents/XPP/Basin of attraction/aEIF_bif_bassin.jpg  \n  inflating: contents/XPP/Basin of attraction/-100/V_w_100.jpg  \n  inflating: contents/XPP/Basin of attraction/-150/V_w_150.jpg  \n  inflating: contents/XPP/Basin of attraction/-200/V_w_200.jpg  \n  inflating: contents/manifest.xml   \nCompleted 155 Bytes/~829.1 KiB (2.3 KiB/s) with ~13 file(s) remaining (calculating...)\rupload: contents/K.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/K.m\nCompleted 155 Bytes/~829.1 KiB (2.3 KiB/s) with ~12 file(s) remaining (calculating...)\rCompleted 2.5 KiB/~1.8 MiB (23.9 KiB/s) with ~31 file(s) remaining (calculating...)   \rupload: contents/FI.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/FI.m\nCompleted 2.5 KiB/~1.8 MiB (23.9 KiB/s) with ~30 file(s) remaining (calculating...)\rCompleted 3.7 KiB/~2.2 MiB (31.0 KiB/s) with ~42 file(s) remaining (calculating...)\rupload: contents/README.md to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/README.md\nCompleted 3.7 KiB/~2.2 MiB (31.0 KiB/s) with ~41 file(s) remaining (calculating...)\rCompleted 42.8 KiB/~3.0 MiB (276.0 KiB/s) with ~50 file(s) remaining (calculating...)\rupload: contents/XPP/Basin of attraction/-200/V_w_200.jpg to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/-200/V_w_200.jpg\nCompleted 42.8 KiB/~3.0 MiB (276.0 KiB/s) with ~49 file(s) remaining (calculating...)\rCompleted 115.2 KiB/~3.0 MiB (699.7 KiB/s) with ~49 file(s) remaining (calculating...)\rupload: contents/XPP/Basin of attraction/-100/V_w_100.dat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/-100/V_w_100.dat\nCompleted 115.2 KiB/~3.0 MiB (699.7 KiB/s) with ~48 file(s) remaining (calculating...)\rCompleted 256.9 KiB/~3.0 MiB (1.5 MiB/s) with ~48 file(s) remaining (calculating...)  \rupload: contents/XPP/Basin of attraction/-100/V_w_100.fig to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/-100/V_w_100.fig\nCompleted 256.9 KiB/~3.0 MiB (1.5 MiB/s) with ~47 file(s) remaining (calculating...)\rCompleted 369.1 KiB/~3.0 MiB (2.1 MiB/s) with ~47 file(s) remaining (calculating...)\rupload: contents/XPP/Basin of attraction/-250/250_2.dat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/-250/250_2.dat\nCompleted 369.1 KiB/~3.0 MiB (2.1 MiB/s) with ~46 file(s) remaining (calculating...)\rCompleted 419.5 KiB/~3.0 MiB (2.2 MiB/s) with ~54 file(s) remaining (calculating...)\rupload: contents/XPP/Basin of attraction/-250/V_w_250.mat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/-250/V_w_250.mat\nCompleted 419.5 KiB/~3.0 MiB (2.2 MiB/s) with ~53 file(s) remaining (calculating...)\rCompleted 420.2 KiB/~3.0 MiB (2.2 MiB/s) with ~53 file(s) remaining (calculating...)\rupload: contents/SNRprocessing.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/SNRprocessing.m\nCompleted 420.2 KiB/~3.0 MiB (2.2 MiB/s) with ~52 file(s) remaining (calculating...)\rCompleted 464.7 KiB/~3.0 MiB (2.4 MiB/s) with ~53 file(s) remaining (calculating...)\rupload: contents/XPP/Basin of attraction/-100/V_w_100.jpg to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/-100/V_w_100.jpg\nCompleted 464.7 KiB/~3.0 MiB (2.4 MiB/s) with ~52 file(s) remaining (calculating...)\rCompleted 465.3 KiB/~8.4 MiB (2.2 MiB/s) with ~71 file(s) remaining (calculating...)\rupload: contents/XPP/Basin of attraction/-250/wb-250.mat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/-250/wb-250.mat\nCompleted 465.3 KiB/~8.4 MiB (2.2 MiB/s) with ~70 file(s) remaining (calculating...)\rCompleted 465.4 KiB/~8.4 MiB (2.2 MiB/s) with ~70 file(s) remaining (calculating...)\rupload: contents/XPP/Basin of attraction/Basin_trajectory.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/Basin_trajectory.m\nCompleted 465.4 KiB/~8.4 MiB (2.2 MiB/s) with ~69 file(s) remaining (calculating...)\rCompleted 537.8 KiB/~8.4 MiB (2.4 MiB/s) with ~69 file(s) remaining (calculating...)\rupload: contents/XPP/Basin of attraction/-150/V_w_150.dat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/-150/V_w_150.dat\nCompleted 537.8 KiB/~8.4 MiB (2.4 MiB/s) with ~68 file(s) remaining (calculating...)\rCompleted 572.8 KiB/~8.4 MiB (2.5 MiB/s) with ~76 file(s) remaining (calculating...)\rupload: contents/XPP/Basin of attraction/aEIF_bif_bassin.jpg to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/aEIF_bif_bassin.jpg\nCompleted 572.8 KiB/~8.4 MiB (2.5 MiB/s) with ~75 file(s) remaining (calculating...)\rCompleted 572.9 KiB/~8.4 MiB (2.4 MiB/s) with ~81 file(s) remaining (calculating...)\rupload: contents/XPP/Basin of attraction/aEIF_bif_diagrams.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/aEIF_bif_diagrams.m\nCompleted 572.9 KiB/~8.4 MiB (2.4 MiB/s) with ~80 file(s) remaining (calculating...)\rCompleted 688.7 KiB/~18.5 MiB (2.8 MiB/s) with ~87 file(s) remaining (calculating...)\rupload: contents/XPP/Basin of attraction/aEIF_bif_bassin.fig to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/aEIF_bif_bassin.fig\nCompleted 688.7 KiB/~18.5 MiB (2.8 MiB/s) with ~86 file(s) remaining (calculating...)\rCompleted 815.5 KiB/~18.5 MiB (3.3 MiB/s) with ~86 file(s) remaining (calculating...)\rupload: contents/XPP/Basin of attraction/-250/250_1.dat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/-250/250_1.dat\nCompleted 815.5 KiB/~18.5 MiB (3.3 MiB/s) with ~85 file(s) remaining (calculating...)\rCompleted 850.4 KiB/~29.7 MiB (3.3 MiB/s) with ~90 file(s) remaining (calculating...)\rupload: contents/XPP/Basin of attraction/aEIF_bif_diagrams.mat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/aEIF_bif_diagrams.mat\nCompleted 850.4 KiB/~29.7 MiB (3.3 MiB/s) with ~89 file(s) remaining (calculating...)\rCompleted 851.1 KiB/29.8 MiB (3.3 MiB/s) with 91 file(s) remaining                   \rupload: contents/XPP/Basin of attraction/-250/vb-250.mat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/-250/vb-250.mat\nCompleted 851.1 KiB/29.8 MiB (3.3 MiB/s) with 90 file(s) remaining\rCompleted 996.5 KiB/29.8 MiB (3.8 MiB/s) with 90 file(s) remaining\rupload: contents/XPP/Basin of attraction/bassin_trajectories.mat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/bassin_trajectories.mat\nCompleted 996.5 KiB/29.8 MiB (3.8 MiB/s) with 89 file(s) remaining\rCompleted 999.4 KiB/29.8 MiB (3.7 MiB/s) with 89 file(s) remaining\rupload: contents/XPP/aEIF.sedml to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/aEIF.sedml\nCompleted 999.4 KiB/29.8 MiB (3.7 MiB/s) with 88 file(s) remaining\rCompleted 999.8 KiB/29.8 MiB (3.7 MiB/s) with 88 file(s) remaining\rupload: contents/XPP/aEIF.ode to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/aEIF.ode\nCompleted 999.8 KiB/29.8 MiB (3.7 MiB/s) with 87 file(s) remaining\rCompleted 1.1 MiB/29.8 MiB (4.2 MiB/s) with 87 file(s) remaining  \rupload: contents/XPP/aEIF.ode.auto to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/aEIF.ode.auto\nCompleted 1.1 MiB/29.8 MiB (4.2 MiB/s) with 86 file(s) remaining\rCompleted 1.1 MiB/29.8 MiB (4.1 MiB/s) with 86 file(s) remaining\rupload: contents/XPP/aEIF_bif.pdf to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/aEIF_bif.pdf\nCompleted 1.1 MiB/29.8 MiB (4.1 MiB/s) with 85 file(s) remaining\rCompleted 1.3 MiB/29.8 MiB (4.2 MiB/s) with 85 file(s) remaining\rupload: contents/XPP/Basin of attraction/-150/V_w_150.fig to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/-150/V_w_150.fig\nCompleted 1.3 MiB/29.8 MiB (4.2 MiB/s) with 84 file(s) remaining\rCompleted 1.4 MiB/29.8 MiB (4.4 MiB/s) with 84 file(s) remaining\rupload: contents/XPP/Basin of attraction/-200/V_w_200.dat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/-200/V_w_200.dat\nCompleted 1.4 MiB/29.8 MiB (4.4 MiB/s) with 83 file(s) remaining\rCompleted 1.4 MiB/29.8 MiB (4.5 MiB/s) with 83 file(s) remaining\rupload: contents/XPP/Basin of attraction/-150/V_w_150.jpg to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/-150/V_w_150.jpg\nCompleted 1.4 MiB/29.8 MiB (4.5 MiB/s) with 82 file(s) remaining\rCompleted 1.4 MiB/29.8 MiB (4.5 MiB/s) with 82 file(s) remaining\rupload: contents/XPP/cell1/-200-2.dat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/-200-2.dat\nCompleted 1.4 MiB/29.8 MiB (4.5 MiB/s) with 81 file(s) remaining\rCompleted 1.5 MiB/29.8 MiB (4.6 MiB/s) with 81 file(s) remaining\rupload: contents/XPP/cell1/-200-1.dat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/-200-1.dat\nCompleted 1.5 MiB/29.8 MiB (4.6 MiB/s) with 80 file(s) remaining\rCompleted 1.6 MiB/29.8 MiB (4.8 MiB/s) with 80 file(s) remaining\rupload: contents/XPP/cell1/-100-2.dat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/-100-2.dat\nCompleted 1.6 MiB/29.8 MiB (4.8 MiB/s) with 79 file(s) remaining\rCompleted 1.6 MiB/29.8 MiB (4.8 MiB/s) with 79 file(s) remaining\rupload: contents/XPP/cell1/BIF-150.eps to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/BIF-150.eps\nCompleted 1.6 MiB/29.8 MiB (4.8 MiB/s) with 78 file(s) remaining\rCompleted 1.7 MiB/29.8 MiB (4.9 MiB/s) with 78 file(s) remaining\rupload: contents/XPP/cell1/-100-1.dat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/-100-1.dat\nCompleted 1.7 MiB/29.8 MiB (4.9 MiB/s) with 77 file(s) remaining\rCompleted 1.9 MiB/29.8 MiB (5.1 MiB/s) with 77 file(s) remaining\rupload: contents/XPP/Basin of attraction/-200/V_w_200.fig to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/Basin of attraction/-200/V_w_200.fig\nCompleted 1.9 MiB/29.8 MiB (5.1 MiB/s) with 76 file(s) remaining\rCompleted 2.0 MiB/29.8 MiB (5.3 MiB/s) with 76 file(s) remaining\rupload: contents/XPP/cell1/BIF-150.auto to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/BIF-150.auto\nCompleted 2.0 MiB/29.8 MiB (5.3 MiB/s) with 75 file(s) remaining\rCompleted 2.0 MiB/29.8 MiB (5.3 MiB/s) with 75 file(s) remaining\rupload: contents/XPP/cell1/vb-100.mat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/vb-100.mat\nCompleted 2.0 MiB/29.8 MiB (5.3 MiB/s) with 74 file(s) remaining\rCompleted 2.0 MiB/29.8 MiB (5.2 MiB/s) with 74 file(s) remaining\rupload: contents/XPP/cell1/vb-150.mat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/vb-150.mat\nCompleted 2.0 MiB/29.8 MiB (5.2 MiB/s) with 73 file(s) remaining\rCompleted 2.0 MiB/29.8 MiB (5.4 MiB/s) with 73 file(s) remaining\rupload: contents/XPP/cell1/bassin-150.dat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/bassin-150.dat\nCompleted 2.0 MiB/29.8 MiB (5.4 MiB/s) with 72 file(s) remaining\rCompleted 2.0 MiB/29.8 MiB (5.3 MiB/s) with 72 file(s) remaining\rupload: contents/XPP/cell1/vb-200.mat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/vb-200.mat\nCompleted 2.0 MiB/29.8 MiB (5.3 MiB/s) with 71 file(s) remaining\rCompleted 2.1 MiB/29.8 MiB (5.4 MiB/s) with 71 file(s) remaining\rupload: contents/XPP/cell1/vbwb-100.mat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/vbwb-100.mat\nCompleted 2.1 MiB/29.8 MiB (5.4 MiB/s) with 70 file(s) remaining\rCompleted 2.1 MiB/29.8 MiB (5.3 MiB/s) with 70 file(s) remaining\rupload: contents/XPP/cell1/vbwb-200.mat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/vbwb-200.mat\nCompleted 2.1 MiB/29.8 MiB (5.3 MiB/s) with 69 file(s) remaining\rCompleted 2.1 MiB/29.8 MiB (5.3 MiB/s) with 69 file(s) remaining\rupload: contents/XPP/cell1/vbwb-150.mat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/vbwb-150.mat\nCompleted 2.1 MiB/29.8 MiB (5.3 MiB/s) with 68 file(s) remaining\rCompleted 2.2 MiB/29.8 MiB (5.3 MiB/s) with 68 file(s) remaining\rupload: contents/XPP/cell1/curve.dat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/curve.dat\nCompleted 2.2 MiB/29.8 MiB (5.3 MiB/s) with 67 file(s) remaining\rCompleted 2.2 MiB/29.8 MiB (5.3 MiB/s) with 67 file(s) remaining\rupload: contents/XPP/cell1/wb-100.mat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/wb-100.mat\nCompleted 2.2 MiB/29.8 MiB (5.3 MiB/s) with 66 file(s) remaining\rCompleted 2.2 MiB/29.8 MiB (5.1 MiB/s) with 66 file(s) remaining\rupload: contents/XPP/cell1/wb-200.mat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/wb-200.mat\nCompleted 2.2 MiB/29.8 MiB (5.1 MiB/s) with 65 file(s) remaining\rCompleted 2.3 MiB/29.8 MiB (5.2 MiB/s) with 65 file(s) remaining\rupload: contents/article-figures/PMC4991839/pcbi.1005000.g001.jpg to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/article-figures/PMC4991839/pcbi.1005000.g001.jpg\nCompleted 2.3 MiB/29.8 MiB (5.2 MiB/s) with 64 file(s) remaining\rCompleted 2.4 MiB/29.8 MiB (5.4 MiB/s) with 64 file(s) remaining\rupload: contents/article-figures/PMC4991839/pcbi.1005000.g003.jpg to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/article-figures/PMC4991839/pcbi.1005000.g003.jpg\nCompleted 2.4 MiB/29.8 MiB (5.4 MiB/s) with 63 file(s) remaining\rCompleted 2.5 MiB/29.8 MiB (5.5 MiB/s) with 63 file(s) remaining\rupload: contents/article-figures/PMC4991839/pcbi.1005000.g002.jpg to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/article-figures/PMC4991839/pcbi.1005000.g002.jpg\nCompleted 2.5 MiB/29.8 MiB (5.5 MiB/s) with 62 file(s) remaining\rCompleted 2.5 MiB/29.8 MiB (5.4 MiB/s) with 62 file(s) remaining\rupload: contents/aeif.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/aeif.m\nCompleted 2.5 MiB/29.8 MiB (5.4 MiB/s) with 61 file(s) remaining\rCompleted 2.5 MiB/29.8 MiB (5.3 MiB/s) with 61 file(s) remaining\rupload: contents/XPP/cell1/wb-150.mat to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/XPP/cell1/wb-150.mat\nCompleted 2.5 MiB/29.8 MiB (5.3 MiB/s) with 60 file(s) remaining\rCompleted 2.6 MiB/29.8 MiB (5.5 MiB/s) with 60 file(s) remaining\rupload: contents/article-figures/PMC4991839/pcbi.1005000.g006.jpg to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/article-figures/PMC4991839/pcbi.1005000.g006.jpg\nCompleted 2.6 MiB/29.8 MiB (5.5 MiB/s) with 59 file(s) remaining\rCompleted 2.7 MiB/29.8 MiB (5.6 MiB/s) with 59 file(s) remaining\rupload: contents/article-figures/PMC4991839/pcbi.1005000.g007.jpg to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/article-figures/PMC4991839/pcbi.1005000.g007.jpg\nCompleted 2.7 MiB/29.8 MiB (5.6 MiB/s) with 58 file(s) remaining\rCompleted 2.8 MiB/29.8 MiB (5.9 MiB/s) with 58 file(s) remaining\rupload: contents/article-figures/PMC4991839/pcbi.1005000.g005.jpg to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/article-figures/PMC4991839/pcbi.1005000.g005.jpg\nCompleted 2.8 MiB/29.8 MiB (5.9 MiB/s) with 57 file(s) remaining\rCompleted 2.8 MiB/29.8 MiB (5.8 MiB/s) with 57 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/CaP.mod to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/CaP.mod\nCompleted 2.8 MiB/29.8 MiB (5.8 MiB/s) with 56 file(s) remaining\rCompleted 2.8 MiB/29.8 MiB (5.7 MiB/s) with 56 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/CaT.mod to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/CaT.mod\nCompleted 2.8 MiB/29.8 MiB (5.7 MiB/s) with 55 file(s) remaining\rCompleted 3.0 MiB/29.8 MiB (5.9 MiB/s) with 55 file(s) remaining\rupload: contents/article-figures/PMC4991839/pcbi.1005000.g004.jpg to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/article-figures/PMC4991839/pcbi.1005000.g004.jpg\nCompleted 3.0 MiB/29.8 MiB (5.9 MiB/s) with 54 file(s) remaining\rCompleted 3.0 MiB/29.8 MiB (5.8 MiB/s) with 54 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/DS2M0Purk.hoc to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/DS2M0Purk.hoc\nCompleted 3.0 MiB/29.8 MiB (5.8 MiB/s) with 53 file(s) remaining\rCompleted 3.0 MiB/29.8 MiB (5.6 MiB/s) with 53 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/DS2M0Purk_play_loop.hoc to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/DS2M0Purk_play_loop.hoc\nCompleted 3.0 MiB/29.8 MiB (5.6 MiB/s) with 52 file(s) remaining\rCompleted 3.0 MiB/29.8 MiB (5.6 MiB/s) with 52 file(s) remaining\rCompleted 3.0 MiB/29.8 MiB (5.5 MiB/s) with 52 file(s) remaining\rCompleted 3.0 MiB/29.8 MiB (5.6 MiB/s) with 52 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/Instructions.txt to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/Instructions.txt\nCompleted 3.0 MiB/29.8 MiB (5.6 MiB/s) with 51 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/Imean=-160pA.jpg to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/Imean=-160pA.jpg\nCompleted 3.0 MiB/29.8 MiB (5.6 MiB/s) with 50 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/DS2M0Purk_play.hoc to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/DS2M0Purk_play.hoc\nCompleted 3.0 MiB/29.8 MiB (5.6 MiB/s) with 49 file(s) remaining\rCompleted 3.0 MiB/29.8 MiB (5.5 MiB/s) with 49 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/CalciumP.mod to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/CalciumP.mod\nCompleted 3.0 MiB/29.8 MiB (5.5 MiB/s) with 48 file(s) remaining\rCompleted 3.0 MiB/29.8 MiB (5.5 MiB/s) with 48 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/KC.mod to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/KC.mod\nCompleted 3.0 MiB/29.8 MiB (5.5 MiB/s) with 47 file(s) remaining\rCompleted 3.0 MiB/29.8 MiB (5.4 MiB/s) with 47 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/KA.mod to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/KA.mod\nCompleted 3.0 MiB/29.8 MiB (5.4 MiB/s) with 46 file(s) remaining\rCompleted 3.1 MiB/29.8 MiB (5.4 MiB/s) with 46 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/Kdr.mod to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/Kdr.mod\nCompleted 3.1 MiB/29.8 MiB (5.4 MiB/s) with 45 file(s) remaining\rCompleted 3.1 MiB/29.8 MiB (5.2 MiB/s) with 45 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/K2.mod to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/K2.mod\nCompleted 3.1 MiB/29.8 MiB (5.2 MiB/s) with 44 file(s) remaining\rCompleted 3.3 MiB/29.8 MiB (5.6 MiB/s) with 44 file(s) remaining\rCompleted 3.6 MiB/29.8 MiB (6.0 MiB/s) with 44 file(s) remaining\rCompleted 3.6 MiB/29.8 MiB (6.0 MiB/s) with 44 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/Kh1.mod to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/Kh1.mod\nCompleted 3.6 MiB/29.8 MiB (6.0 MiB/s) with 43 file(s) remaining\rCompleted 3.6 MiB/29.8 MiB (5.9 MiB/s) with 43 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/NaF.mod to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/NaF.mod\nCompleted 3.6 MiB/29.8 MiB (5.9 MiB/s) with 42 file(s) remaining\rCompleted 3.8 MiB/29.8 MiB (6.3 MiB/s) with 42 file(s) remaining\rCompleted 3.8 MiB/29.8 MiB (6.3 MiB/s) with 42 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/Leak.mod to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/Leak.mod\nCompleted 3.8 MiB/29.8 MiB (6.3 MiB/s) with 41 file(s) remaining\rCompleted 4.1 MiB/29.8 MiB (6.7 MiB/s) with 41 file(s) remaining\rCompleted 4.3 MiB/29.8 MiB (7.1 MiB/s) with 41 file(s) remaining\rCompleted 4.3 MiB/29.8 MiB (7.1 MiB/s) with 41 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/NaP.mod to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/NaP.mod\nCompleted 4.3 MiB/29.8 MiB (7.1 MiB/s) with 40 file(s) remaining\rCompleted 4.6 MiB/29.8 MiB (7.5 MiB/s) with 40 file(s) remaining\rCompleted 4.8 MiB/29.8 MiB (7.9 MiB/s) with 40 file(s) remaining\rCompleted 5.1 MiB/29.8 MiB (8.3 MiB/s) with 40 file(s) remaining\rCompleted 5.3 MiB/29.8 MiB (8.5 MiB/s) with 40 file(s) remaining\rCompleted 5.3 MiB/29.8 MiB (8.4 MiB/s) with 40 file(s) remaining\rupload: contents/dendrite.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/dendrite.m\nCompleted 5.3 MiB/29.8 MiB (8.4 MiB/s) with 39 file(s) remaining\rCompleted 5.3 MiB/29.8 MiB (8.4 MiB/s) with 39 file(s) remaining\rupload: contents/dendritenodendrite.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/dendritenodendrite.m\nCompleted 5.3 MiB/29.8 MiB (8.4 MiB/s) with 38 file(s) remaining\rCompleted 5.6 MiB/29.8 MiB (8.7 MiB/s) with 38 file(s) remaining\rCompleted 5.8 MiB/29.8 MiB (9.1 MiB/s) with 38 file(s) remaining\rCompleted 6.1 MiB/29.8 MiB (9.5 MiB/s) with 38 file(s) remaining\rCompleted 6.1 MiB/29.8 MiB (9.5 MiB/s) with 38 file(s) remaining\rupload: contents/hist2.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/hist2.m\nCompleted 6.1 MiB/29.8 MiB (9.5 MiB/s) with 37 file(s) remaining\rCompleted 6.3 MiB/29.8 MiB (9.8 MiB/s) with 37 file(s) remaining\rCompleted 6.6 MiB/29.8 MiB (10.2 MiB/s) with 37 file(s) remaining\rCompleted 6.8 MiB/29.8 MiB (10.6 MiB/s) with 37 file(s) remaining\rCompleted 7.1 MiB/29.8 MiB (10.9 MiB/s) with 37 file(s) remaining\rCompleted 7.1 MiB/29.8 MiB (10.9 MiB/s) with 37 file(s) remaining\rupload: contents/hist_v.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/hist_v.m\nCompleted 7.1 MiB/29.8 MiB (10.9 MiB/s) with 36 file(s) remaining\rCompleted 7.3 MiB/29.8 MiB (11.3 MiB/s) with 36 file(s) remaining\rCompleted 7.5 MiB/29.8 MiB (11.6 MiB/s) with 36 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/Purk2M0.nrn to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/Purk2M0.nrn\nCompleted 7.5 MiB/29.8 MiB (11.6 MiB/s) with 35 file(s) remaining\rCompleted 7.8 MiB/29.8 MiB (11.9 MiB/s) with 35 file(s) remaining\rCompleted 8.0 MiB/29.8 MiB (12.3 MiB/s) with 35 file(s) remaining\rCompleted 8.0 MiB/29.8 MiB (12.2 MiB/s) with 35 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/manifest.xml\nCompleted 8.0 MiB/29.8 MiB (12.2 MiB/s) with 34 file(s) remaining\rCompleted 8.0 MiB/29.8 MiB (12.1 MiB/s) with 34 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/KMnew2.mod to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/KMnew2.mod\nCompleted 8.0 MiB/29.8 MiB (12.1 MiB/s) with 33 file(s) remaining\rCompleted 8.0 MiB/29.8 MiB (11.9 MiB/s) with 33 file(s) remaining\rupload: contents/matlabserver.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/matlabserver.m\nCompleted 8.0 MiB/29.8 MiB (11.9 MiB/s) with 32 file(s) remaining\rCompleted 8.0 MiB/29.8 MiB (11.9 MiB/s) with 32 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/Kh2.mod to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/Kh2.mod\nCompleted 8.0 MiB/29.8 MiB (11.9 MiB/s) with 31 file(s) remaining\rCompleted 8.1 MiB/29.8 MiB (11.8 MiB/s) with 31 file(s) remaining\rupload: contents/newaEIF_parameters.xls to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/newaEIF_parameters.xls\nCompleted 8.1 MiB/29.8 MiB (11.8 MiB/s) with 30 file(s) remaining\rCompleted 8.1 MiB/29.8 MiB (11.7 MiB/s) with 30 file(s) remaining\rupload: contents/nodendrite.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/nodendrite.m\nCompleted 8.1 MiB/29.8 MiB (11.7 MiB/s) with 29 file(s) remaining\rCompleted 8.1 MiB/29.8 MiB (11.7 MiB/s) with 29 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/metadata.rdf\nCompleted 8.1 MiB/29.8 MiB (11.7 MiB/s) with 28 file(s) remaining\rCompleted 8.1 MiB/29.8 MiB (11.7 MiB/s) with 28 file(s) remaining\rupload: contents/parsave.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/parsave.m\nCompleted 8.1 MiB/29.8 MiB (11.7 MiB/s) with 27 file(s) remaining\rCompleted 8.1 MiB/29.8 MiB (11.2 MiB/s) with 27 file(s) remaining\rupload: contents/psth.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/psth.m\nCompleted 8.1 MiB/29.8 MiB (11.2 MiB/s) with 26 file(s) remaining\rCompleted 8.1 MiB/29.8 MiB (11.1 MiB/s) with 26 file(s) remaining\rupload: contents/psthprob.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/psthprob.m\nCompleted 8.1 MiB/29.8 MiB (11.1 MiB/s) with 25 file(s) remaining\rCompleted 8.1 MiB/29.8 MiB (10.9 MiB/s) with 25 file(s) remaining\rupload: contents/psthsigma.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/psthsigma.m\nCompleted 8.1 MiB/29.8 MiB (10.9 MiB/s) with 24 file(s) remaining\rCompleted 8.1 MiB/29.8 MiB (10.9 MiB/s) with 24 file(s) remaining\rupload: contents/psthhold.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/psthhold.m\nCompleted 8.1 MiB/29.8 MiB (10.9 MiB/s) with 23 file(s) remaining\rCompleted 8.1 MiB/29.8 MiB (10.8 MiB/s) with 23 file(s) remaining\rupload: contents/ramp2.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/ramp2.m\nCompleted 8.1 MiB/29.8 MiB (10.8 MiB/s) with 22 file(s) remaining\rCompleted 8.1 MiB/29.8 MiB (10.7 MiB/s) with 22 file(s) remaining\rupload: contents/ramp2 (rough method).m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/ramp2 (rough method).m\nCompleted 8.1 MiB/29.8 MiB (10.7 MiB/s) with 21 file(s) remaining\rCompleted 8.2 MiB/29.8 MiB (10.7 MiB/s) with 21 file(s) remaining\rupload: contents/psthprobnew.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/psthprobnew.m\nCompleted 8.2 MiB/29.8 MiB (10.7 MiB/s) with 20 file(s) remaining\rCompleted 8.2 MiB/29.8 MiB (10.7 MiB/s) with 20 file(s) remaining\rupload: contents/ramp.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/ramp.m\nCompleted 8.2 MiB/29.8 MiB (10.7 MiB/s) with 19 file(s) remaining\rCompleted 8.4 MiB/29.8 MiB (10.9 MiB/s) with 19 file(s) remaining\rupload: contents/deShutter-Bower/DSB94_play/input_increasing_noise.txt to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/deShutter-Bower/DSB94_play/input_increasing_noise.txt\nCompleted 8.4 MiB/29.8 MiB (10.9 MiB/s) with 18 file(s) remaining\rCompleted 8.4 MiB/29.8 MiB (10.7 MiB/s) with 18 file(s) remaining\rupload: contents/sevencells.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/sevencells.m\nCompleted 8.4 MiB/29.8 MiB (10.7 MiB/s) with 17 file(s) remaining\rCompleted 8.4 MiB/29.8 MiB (10.7 MiB/s) with 17 file(s) remaining\rupload: contents/par.txt to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/par.txt\nCompleted 8.4 MiB/29.8 MiB (10.7 MiB/s) with 16 file(s) remaining\rCompleted 8.4 MiB/29.8 MiB (10.7 MiB/s) with 16 file(s) remaining\rupload: contents/ramp_test.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/ramp_test.m\nCompleted 8.4 MiB/29.8 MiB (10.7 MiB/s) with 15 file(s) remaining\rCompleted 8.4 MiB/29.8 MiB (10.4 MiB/s) with 15 file(s) remaining\rCompleted 8.4 MiB/29.8 MiB (10.4 MiB/s) with 15 file(s) remaining\rupload: contents/test_prob_par.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/test_prob_par.m\nCompleted 8.4 MiB/29.8 MiB (10.4 MiB/s) with 14 file(s) remaining\rupload: contents/test_orn.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/test_orn.m\nCompleted 8.4 MiB/29.8 MiB (10.4 MiB/s) with 13 file(s) remaining\rCompleted 8.4 MiB/29.8 MiB (10.3 MiB/s) with 13 file(s) remaining\rupload: contents/trajectory.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/trajectory.m\nCompleted 8.4 MiB/29.8 MiB (10.3 MiB/s) with 12 file(s) remaining\rCompleted 8.4 MiB/29.8 MiB (10.3 MiB/s) with 12 file(s) remaining\rupload: contents/sigma_opt.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/sigma_opt.m\nCompleted 8.4 MiB/29.8 MiB (10.3 MiB/s) with 11 file(s) remaining\rCompleted 8.4 MiB/29.8 MiB (10.2 MiB/s) with 11 file(s) remaining\rupload: contents/test_prob.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/test_prob.m\nCompleted 8.4 MiB/29.8 MiB (10.2 MiB/s) with 10 file(s) remaining\rCompleted 8.4 MiB/29.8 MiB (10.2 MiB/s) with 10 file(s) remaining\rupload: contents/test_orn_par.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/test_orn_par.m\nCompleted 8.4 MiB/29.8 MiB (10.2 MiB/s) with 9 file(s) remaining\rCompleted 8.7 MiB/29.8 MiB (10.2 MiB/s) with 9 file(s) remaining\rCompleted 8.9 MiB/29.8 MiB (10.4 MiB/s) with 9 file(s) remaining\rCompleted 9.2 MiB/29.8 MiB (10.7 MiB/s) with 9 file(s) remaining\rCompleted 9.4 MiB/29.8 MiB (10.8 MiB/s) with 9 file(s) remaining\rCompleted 9.7 MiB/29.8 MiB (11.0 MiB/s) with 9 file(s) remaining\rCompleted 9.9 MiB/29.8 MiB (11.3 MiB/s) with 9 file(s) remaining\rCompleted 10.2 MiB/29.8 MiB (11.6 MiB/s) with 9 file(s) remaining\rCompleted 10.4 MiB/29.8 MiB (11.8 MiB/s) with 9 file(s) remaining\rCompleted 10.7 MiB/29.8 MiB (12.1 MiB/s) with 9 file(s) remaining\rCompleted 10.9 MiB/29.8 MiB (12.4 MiB/s) with 9 file(s) remaining\rCompleted 11.0 MiB/29.8 MiB (12.4 MiB/s) with 9 file(s) remaining\rupload: contents/trajectory_increase_noise.jpg to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/trajectory_increase_noise.jpg\nCompleted 11.0 MiB/29.8 MiB (12.4 MiB/s) with 8 file(s) remaining\rCompleted 11.2 MiB/29.8 MiB (12.7 MiB/s) with 8 file(s) remaining\rCompleted 11.2 MiB/29.8 MiB (12.6 MiB/s) with 8 file(s) remaining\rupload: contents/trajectory_increase_noise.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/trajectory_increase_noise.m\nCompleted 11.2 MiB/29.8 MiB (12.6 MiB/s) with 7 file(s) remaining\rCompleted 11.5 MiB/29.8 MiB (12.9 MiB/s) with 7 file(s) remaining\rCompleted 11.7 MiB/29.8 MiB (13.1 MiB/s) with 7 file(s) remaining\rCompleted 12.0 MiB/29.8 MiB (13.3 MiB/s) with 7 file(s) remaining\rCompleted 12.2 MiB/29.8 MiB (13.6 MiB/s) with 7 file(s) remaining\rCompleted 12.5 MiB/29.8 MiB (13.9 MiB/s) with 7 file(s) remaining\rCompleted 12.7 MiB/29.8 MiB (14.1 MiB/s) with 7 file(s) remaining\rCompleted 13.0 MiB/29.8 MiB (14.3 MiB/s) with 7 file(s) remaining\rCompleted 13.0 MiB/29.8 MiB (14.1 MiB/s) with 7 file(s) remaining\rupload: contents/trajectory_rand_noise.jpg to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/trajectory_rand_noise.jpg\nCompleted 13.0 MiB/29.8 MiB (14.1 MiB/s) with 6 file(s) remaining\rCompleted 13.3 MiB/29.8 MiB (14.3 MiB/s) with 6 file(s) remaining\rCompleted 13.5 MiB/29.8 MiB (14.6 MiB/s) with 6 file(s) remaining\rCompleted 13.8 MiB/29.8 MiB (14.8 MiB/s) with 6 file(s) remaining\rCompleted 14.0 MiB/29.8 MiB (15.1 MiB/s) with 6 file(s) remaining\rCompleted 14.0 MiB/29.8 MiB (15.0 MiB/s) with 6 file(s) remaining\rupload: contents/trajectory_rand_noise.m to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/trajectory_rand_noise.m\nCompleted 14.0 MiB/29.8 MiB (15.0 MiB/s) with 5 file(s) remaining\rCompleted 14.3 MiB/29.8 MiB (15.2 MiB/s) with 5 file(s) remaining\rCompleted 14.5 MiB/29.8 MiB (15.5 MiB/s) with 5 file(s) remaining\rCompleted 14.8 MiB/29.8 MiB (15.7 MiB/s) with 5 file(s) remaining\rCompleted 15.0 MiB/29.8 MiB (16.0 MiB/s) with 5 file(s) remaining\rCompleted 15.3 MiB/29.8 MiB (16.2 MiB/s) with 5 file(s) remaining\rCompleted 15.5 MiB/29.8 MiB (16.5 MiB/s) with 5 file(s) remaining\rCompleted 15.8 MiB/29.8 MiB (16.7 MiB/s) with 5 file(s) remaining\rCompleted 16.0 MiB/29.8 MiB (17.0 MiB/s) with 5 file(s) remaining\rCompleted 16.3 MiB/29.8 MiB (17.3 MiB/s) with 5 file(s) remaining\rCompleted 16.5 MiB/29.8 MiB (17.4 MiB/s) with 5 file(s) remaining\rCompleted 16.8 MiB/29.8 MiB (17.6 MiB/s) with 5 file(s) remaining\rCompleted 17.0 MiB/29.8 MiB (17.9 MiB/s) with 5 file(s) remaining\rCompleted 17.1 MiB/29.8 MiB (17.9 MiB/s) with 5 file(s) remaining\rupload: contents/trajectory_rand_noise.png to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/trajectory_rand_noise.png\nCompleted 17.1 MiB/29.8 MiB (17.9 MiB/s) with 4 file(s) remaining\rCompleted 17.3 MiB/29.8 MiB (18.1 MiB/s) with 4 file(s) remaining\rupload: contents/trajectory_rand_noise.eps to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/trajectory_rand_noise.eps\nCompleted 17.3 MiB/29.8 MiB (18.1 MiB/s) with 3 file(s) remaining\rCompleted 17.6 MiB/29.8 MiB (18.4 MiB/s) with 3 file(s) remaining\rCompleted 17.8 MiB/29.8 MiB (18.6 MiB/s) with 3 file(s) remaining\rCompleted 18.1 MiB/29.8 MiB (18.8 MiB/s) with 3 file(s) remaining\rCompleted 18.3 MiB/29.8 MiB (19.0 MiB/s) with 3 file(s) remaining\rCompleted 18.6 MiB/29.8 MiB (19.3 MiB/s) with 3 file(s) remaining\rCompleted 18.8 MiB/29.8 MiB (19.5 MiB/s) with 3 file(s) remaining\rCompleted 19.1 MiB/29.8 MiB (19.8 MiB/s) with 3 file(s) remaining\rCompleted 19.3 MiB/29.8 MiB (20.0 MiB/s) with 3 file(s) remaining\rCompleted 19.6 MiB/29.8 MiB (20.2 MiB/s) with 3 file(s) remaining\rCompleted 19.8 MiB/29.8 MiB (20.5 MiB/s) with 3 file(s) remaining\rCompleted 20.1 MiB/29.8 MiB (20.7 MiB/s) with 3 file(s) remaining\rCompleted 20.3 MiB/29.8 MiB (21.0 MiB/s) with 3 file(s) remaining\rCompleted 20.6 MiB/29.8 MiB (21.2 MiB/s) with 3 file(s) remaining\rCompleted 20.6 MiB/29.8 MiB (21.2 MiB/s) with 3 file(s) remaining\rupload: contents/v1-v2.mw to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/v1-v2.mw\nCompleted 20.6 MiB/29.8 MiB (21.2 MiB/s) with 2 file(s) remaining\rCompleted 20.8 MiB/29.8 MiB (21.4 MiB/s) with 2 file(s) remaining\rCompleted 21.1 MiB/29.8 MiB (21.7 MiB/s) with 2 file(s) remaining\rCompleted 21.3 MiB/29.8 MiB (21.9 MiB/s) with 2 file(s) remaining\rCompleted 21.6 MiB/29.8 MiB (22.1 MiB/s) with 2 file(s) remaining\rCompleted 21.8 MiB/29.8 MiB (22.4 MiB/s) with 2 file(s) remaining\rCompleted 22.1 MiB/29.8 MiB (22.6 MiB/s) with 2 file(s) remaining\rCompleted 22.3 MiB/29.8 MiB (22.8 MiB/s) with 2 file(s) remaining\rCompleted 22.6 MiB/29.8 MiB (23.1 MiB/s) with 2 file(s) remaining\rCompleted 22.8 MiB/29.8 MiB (23.3 MiB/s) with 2 file(s) remaining\rCompleted 23.1 MiB/29.8 MiB (23.6 MiB/s) with 2 file(s) remaining\rCompleted 23.3 MiB/29.8 MiB (23.8 MiB/s) with 2 file(s) remaining\rCompleted 23.6 MiB/29.8 MiB (24.0 MiB/s) with 2 file(s) remaining\rCompleted 23.8 MiB/29.8 MiB (24.3 MiB/s) with 2 file(s) remaining\rCompleted 24.1 MiB/29.8 MiB (24.5 MiB/s) with 2 file(s) remaining\rCompleted 24.3 MiB/29.8 MiB (24.8 MiB/s) with 2 file(s) remaining\rCompleted 24.6 MiB/29.8 MiB (25.0 MiB/s) with 2 file(s) remaining\rCompleted 24.8 MiB/29.8 MiB (25.2 MiB/s) with 2 file(s) remaining\rCompleted 25.1 MiB/29.8 MiB (25.5 MiB/s) with 2 file(s) remaining\rCompleted 25.3 MiB/29.8 MiB (25.7 MiB/s) with 2 file(s) remaining\rCompleted 25.6 MiB/29.8 MiB (25.9 MiB/s) with 2 file(s) remaining\rCompleted 25.8 MiB/29.8 MiB (26.2 MiB/s) with 2 file(s) remaining\rCompleted 26.1 MiB/29.8 MiB (26.4 MiB/s) with 2 file(s) remaining\rCompleted 26.3 MiB/29.8 MiB (26.7 MiB/s) with 2 file(s) remaining\rCompleted 26.6 MiB/29.8 MiB (26.9 MiB/s) with 2 file(s) remaining\rCompleted 26.8 MiB/29.8 MiB (27.1 MiB/s) with 2 file(s) remaining\rCompleted 27.1 MiB/29.8 MiB (27.4 MiB/s) with 2 file(s) remaining\rCompleted 27.3 MiB/29.8 MiB (27.6 MiB/s) with 2 file(s) remaining\rCompleted 27.6 MiB/29.8 MiB (27.8 MiB/s) with 2 file(s) remaining\rCompleted 27.8 MiB/29.8 MiB (28.1 MiB/s) with 2 file(s) remaining\rCompleted 28.1 MiB/29.8 MiB (28.3 MiB/s) with 2 file(s) remaining\rCompleted 28.3 MiB/29.8 MiB (28.6 MiB/s) with 2 file(s) remaining\rCompleted 28.6 MiB/29.8 MiB (28.8 MiB/s) with 2 file(s) remaining\rCompleted 28.8 MiB/29.8 MiB (29.0 MiB/s) with 2 file(s) remaining\rCompleted 29.1 MiB/29.8 MiB (29.3 MiB/s) with 2 file(s) remaining\rCompleted 29.3 MiB/29.8 MiB (29.5 MiB/s) with 2 file(s) remaining\rCompleted 29.6 MiB/29.8 MiB (29.7 MiB/s) with 2 file(s) remaining\rCompleted 29.8 MiB/29.8 MiB (29.9 MiB/s) with 2 file(s) remaining\rupload: contents/trajectory_rand_noise.fig to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/trajectory_rand_noise.fig\nCompleted 29.8 MiB/29.8 MiB (29.9 MiB/s) with 1 file(s) remaining\rupload: contents/trajectory_increase_noise.fig to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/contents/trajectory_increase_noise.fig\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /XPP\ncreating group /XPP/aEIF.sedml\ncreating dataset /XPP/aEIF.sedml/report, shape: (3, 1001), type: float64\ndataset created, uuid: d-f6c8cad6-1a93a906-4071-7c18e4-2201a2, chunk_size: (3, 1001)\ncreating attribute combineArchiveLocation in /XPP\ncreating attribute uri in /XPP\ncreating attribute combineArchiveLocation in /XPP/aEIF.sedml\ncreating attribute uri in /XPP/aEIF.sedml\ncreating attribute _type in /XPP/aEIF.sedml/report\ncreating attribute sedmlDataSetDataTypes in /XPP/aEIF.sedml/report\ncreating attribute sedmlDataSetIds in /XPP/aEIF.sedml/report\ncreating attribute sedmlDataSetLabels in /XPP/aEIF.sedml/report\ncreating attribute sedmlDataSetNames in /XPP/aEIF.sedml/report\ncreating attribute sedmlDataSetShapes in /XPP/aEIF.sedml/report\ncreating attribute sedmlId in /XPP/aEIF.sedml/report\ncreating attribute sedmlName in /XPP/aEIF.sedml/report\ncreating attribute uri in /XPP/aEIF.sedml/report\ncreate_links: /\ngot link: XPP\ncreate_links: /XPP\ngot link: aEIF.sedml\ncreate_links: /XPP/aEIF.sedml\ngot link: report\nwrite_dataset src: /XPP/aEIF.sedml/report to tgt: /XPP/aEIF.sedml/report, shape: (3, 1001), type: float64\niterating over chunks for /XPP/aEIF.sedml/report\nwriting dataset data for slice: (slice(0, 3, 1), slice(0, 1001, 1))\ndone with dataload for /XPP/aEIF.sedml/report\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/621d42b8d8a14a834cbf3edd\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 60%)\n  adding: outputs/reports.h5 (deflated 44%)\n  adding: rawLog.txt (deflated 89%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 23.5 KiB/70.1 KiB (297.7 KiB/s) with 2 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/output.zip\nCompleted 23.5 KiB/70.1 KiB (297.7 KiB/s) with 1 file(s) remaining\rCompleted 70.1 KiB/70.1 KiB (566.9 KiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/rawLog.txt\nCompleted 30.8 KiB/30.8 KiB (190.5 KiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/outputs/reports.h5\nCompleted 1.7 KiB/1.7 KiB (31.3 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/621d42b8d8a14a834cbf3edd/outputs/log.yml\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess and upload the outputs of the simulation run ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","skipReason":null,"exception":null,"status":"SUCCEEDED"}