{"sedDocuments":[{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_V"},{"status":"SUCCEEDED","id":"data_set_W"}],"duration":0.076906,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.189625,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"10000.0","key":"total"},{"value":"euler","key":"meth"},{"value":"0.05","key":"dt"},{"value":"0.0","key":"t0"},{"value":"200","key":"njmp"}],"algorithm":"KISAO_0000030","duration":0.169154,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":0.578092,"output":"Archive contains 4 SED-ML documents with 4 models, 4 simulations, 4 tasks, 4 reports, and 4 plots:\r\n  2D-BaseModel-PLOS2012.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 3 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  3D-BaseModel +Noise+Adaptation-PLOS2012.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 4 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  3D-BaseModel+SlowNaInactivation-PLOS2012.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 4 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n  3D-UngroupedModel-PLOS2012.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 5 data sets\r\n    Plots (1):\r\n      plot: 1 curves\r\n\r\nExecuting SED-ML file 1: 2D-BaseModel-PLOS2012.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"2D-BaseModel-PLOS2012.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_V"},{"status":"SUCCEEDED","id":"data_set_W"},{"status":"SUCCEEDED","id":"data_set_Z"}],"duration":0.076907,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.163642,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"10000.0","key":"total"},{"value":"euler","key":"meth"},{"value":"0.05","key":"dt"},{"value":"0.0","key":"t0"},{"value":"200","key":"njmp"}],"algorithm":"KISAO_0000030","duration":0.193818,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":0.59207,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 2: 3D-BaseModel +Noise+Adaptation-PLOS2012.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"3D-BaseModel +Noise+Adaptation-PLOS2012.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_H"},{"status":"SUCCEEDED","id":"data_set_V"},{"status":"SUCCEEDED","id":"data_set_W"}],"duration":0.07696,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.159244,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"10000.0","key":"total"},{"value":"euler","key":"meth"},{"value":"0.05","key":"dt"},{"value":"0.0","key":"t0"},{"value":"200","key":"njmp"}],"algorithm":"KISAO_0000030","duration":0.185238,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":0.575891,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 3: 3D-BaseModel+SlowNaInactivation-PLOS2012.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"3D-BaseModel+SlowNaInactivation-PLOS2012.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_V"},{"status":"SUCCEEDED","id":"data_set_W"},{"status":"SUCCEEDED","id":"data_set_YK"},{"status":"SUCCEEDED","id":"data_set_YNA"}],"duration":0.083279,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"}],"duration":0.150484,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"10000.0","key":"total"},{"value":"euler","key":"meth"},{"value":"0.05","key":"dt"},{"value":"0.0","key":"t0"},{"value":"200","key":"njmp"}],"algorithm":"KISAO_0000030","duration":0.243057,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":0.642695,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 4: 3D-UngroupedModel-PLOS2012.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"3D-UngroupedModel-PLOS2012.sedml"}],"duration":3.050931,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    505      0 --:--:-- --:--:-- --:--:--   507\n\r100  727k  100  727k    0     0  1821k      0 --:--:-- --:--:-- --:--:-- 1821k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive has warnings.\r\n  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 2 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 4 SED documents:\n  SED documents (4):\n    Succeeded: 4\n    Skipped: 0\n    Failed: 0\n  Tasks (4):\n    Succeeded: 4\n    Skipped: 0\n    Failed: 0\n  Outputs (8):\n    Succeeded: 8\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/readme.txt     \n  inflating: contents/3D-BaseModel +Noise+Adaptation-PLOS2012.svg  \n  inflating: contents/2D-BaseModel-PLOS2012.ode  \n  inflating: contents/3D-BaseModel+SlowNaInactivation-PLOS2012.ode  \n  inflating: contents/3D-UngroupedModel-PLOS2012.ode  \n  inflating: contents/3D-BaseModel +Noise+Adaptation-PLOS2012.ode  \n  inflating: contents/2D-BaseModel-PLOS2012.sedml  \n  inflating: contents/3D-BaseModel +Noise+Adaptation-PLOS2012.sedml  \n  inflating: contents/3D-BaseModel+SlowNaInactivation-PLOS2012.sedml  \n  inflating: contents/3D-UngroupedModel-PLOS2012.sedml  \n  inflating: contents/metadata.rdf   \n  inflating: contents/article-figures/PMC3359967/pcbi.1002524.g001.jpg  \n  inflating: contents/article-figures/PMC3359967/pcbi.1002524.g002.jpg  \n  inflating: contents/article-figures/PMC3359967/pcbi.1002524.g003.jpg  \n  inflating: contents/article-figures/PMC3359967/pcbi.1002524.g004.jpg  \n  inflating: contents/article-figures/PMC3359967/pcbi.1002524.g005.jpg  \n  inflating: contents/article-figures/PMC3359967/pcbi.1002524.g006.jpg  \n  inflating: contents/article-figures/PMC3359967/pcbi.1002524.g007.jpg 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remaining\rupload: contents/2D-BaseModel-PLOS2012.ode to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/contents/2D-BaseModel-PLOS2012.ode\nCompleted 5.3 KiB/14.5 MiB (48.8 KiB/s) with 19 file(s) remaining\rCompleted 48.7 KiB/14.5 MiB (383.1 KiB/s) with 19 file(s) remaining\rupload: contents/article-figures/PMC3359967/pcbi.1002524.g005.jpg to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/contents/article-figures/PMC3359967/pcbi.1002524.g005.jpg\nCompleted 48.7 KiB/14.5 MiB (383.1 KiB/s) with 18 file(s) remaining\rCompleted 53.1 KiB/14.5 MiB (413.5 KiB/s) with 18 file(s) remaining\rupload: contents/3D-UngroupedModel-PLOS2012.sedml to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/contents/3D-UngroupedModel-PLOS2012.sedml\nCompleted 53.1 KiB/14.5 MiB (413.5 KiB/s) with 17 file(s) remaining\rCompleted 57.1 KiB/14.5 MiB (394.4 KiB/s) with 17 file(s) remaining\rupload: contents/3D-BaseModel +Noise+Adaptation-PLOS2012.sedml to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/contents/3D-BaseModel +Noise+Adaptation-PLOS2012.sedml\nCompleted 57.1 KiB/14.5 MiB (394.4 KiB/s) with 16 file(s) remaining\rCompleted 133.9 KiB/14.5 MiB (893.5 KiB/s) with 16 file(s) remaining\rupload: contents/article-figures/PMC3359967/pcbi.1002524.g002.jpg to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/contents/article-figures/PMC3359967/pcbi.1002524.g002.jpg\nCompleted 133.9 KiB/14.5 MiB (893.5 KiB/s) with 15 file(s) remaining\rCompleted 191.3 KiB/14.5 MiB (1.2 MiB/s) with 15 file(s) remaining  \rupload: contents/article-figures/PMC3359967/pcbi.1002524.g001.jpg to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/contents/article-figures/PMC3359967/pcbi.1002524.g001.jpg\nCompleted 191.3 KiB/14.5 MiB (1.2 MiB/s) with 14 file(s) remaining\rCompleted 296.1 KiB/14.5 MiB (1.7 MiB/s) with 14 file(s) remaining\rupload: contents/article-figures/PMC3359967/pcbi.1002524.g007.jpg to 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s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/contents/3D-BaseModel +Noise+Adaptation-PLOS2012.svg\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /2D-BaseModel-PLOS2012.sedml\ncreating dataset /2D-BaseModel-PLOS2012.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-a2dd21d1-f69d54b5-6d32-582571-ab7dd9, chunk_size: (2, 1001)\ncreating dataset /2D-BaseModel-PLOS2012.sedml/report, shape: (3, 1001), type: float64\ndataset created, uuid: d-a2dd21d1-f69d54b5-a985-553cb9-42f71f, chunk_size: (3, 1001)\ncreating group /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml\ncreating dataset /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-a2dd21d1-f69d54b5-6e04-dcf380-f1b5f9, chunk_size: (2, 1001)\ncreating dataset /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/report, shape: (4, 1001), type: float64\ndataset created, uuid: d-a2dd21d1-f69d54b5-3123-37fce4-70e8cd, chunk_size: (4, 1001)\ncreating group /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml\ncreating dataset /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-a2dd21d1-f69d54b5-e2e6-80e823-abdd18, chunk_size: (2, 1001)\ncreating dataset /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/report, shape: (4, 1001), type: float64\ndataset created, uuid: d-a2dd21d1-f69d54b5-0f2b-3e84c2-b6fe20, chunk_size: (4, 1001)\ncreating group /3D-UngroupedModel-PLOS2012.sedml\ncreating dataset /3D-UngroupedModel-PLOS2012.sedml/plot, shape: (2, 1001), type: float64\ndataset created, uuid: d-a2dd21d1-f69d54b5-0aeb-7fcd2a-04aa4c, chunk_size: (2, 1001)\ncreating dataset /3D-UngroupedModel-PLOS2012.sedml/report, shape: (5, 1001), type: float64\ndataset created, uuid: d-a2dd21d1-f69d54b5-5958-7ffe01-50f177, chunk_size: (5, 1001)\ncreating attribute combineArchiveLocation in /2D-BaseModel-PLOS2012.sedml\ncreating attribute uri in /2D-BaseModel-PLOS2012.sedml\ncreating attribute _type in /2D-BaseModel-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /2D-BaseModel-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetIds in /2D-BaseModel-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetLabels in /2D-BaseModel-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetNames in /2D-BaseModel-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetShapes in /2D-BaseModel-PLOS2012.sedml/plot\ncreating attribute sedmlId in /2D-BaseModel-PLOS2012.sedml/plot\ncreating attribute uri in /2D-BaseModel-PLOS2012.sedml/plot\ncreating attribute _type in /2D-BaseModel-PLOS2012.sedml/report\ncreating attribute sedmlDataSetDataTypes in /2D-BaseModel-PLOS2012.sedml/report\ncreating attribute sedmlDataSetIds in /2D-BaseModel-PLOS2012.sedml/report\ncreating attribute sedmlDataSetLabels in /2D-BaseModel-PLOS2012.sedml/report\ncreating attribute sedmlDataSetNames in /2D-BaseModel-PLOS2012.sedml/report\ncreating attribute sedmlDataSetShapes in /2D-BaseModel-PLOS2012.sedml/report\ncreating attribute sedmlId in /2D-BaseModel-PLOS2012.sedml/report\ncreating attribute sedmlName in /2D-BaseModel-PLOS2012.sedml/report\ncreating attribute uri in /2D-BaseModel-PLOS2012.sedml/report\ncreating attribute combineArchiveLocation in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml\ncreating attribute uri in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml\ncreating attribute _type in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetIds in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetLabels in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetNames in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetShapes in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot\ncreating attribute sedmlId in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot\ncreating attribute uri in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot\ncreating attribute _type in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/report\ncreating attribute sedmlDataSetDataTypes in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/report\ncreating attribute sedmlDataSetIds in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/report\ncreating attribute sedmlDataSetLabels in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/report\ncreating attribute sedmlDataSetNames in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/report\ncreating attribute sedmlDataSetShapes in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/report\ncreating attribute sedmlId in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/report\ncreating attribute sedmlName in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/report\ncreating attribute uri in /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/report\ncreating attribute combineArchiveLocation in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml\ncreating attribute uri in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml\ncreating attribute _type in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetIds in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetLabels in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetNames in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetShapes in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot\ncreating attribute sedmlId in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot\ncreating attribute uri in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot\ncreating attribute _type in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/report\ncreating attribute sedmlDataSetDataTypes in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/report\ncreating attribute sedmlDataSetIds in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/report\ncreating attribute sedmlDataSetLabels in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/report\ncreating attribute sedmlDataSetNames in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/report\ncreating attribute sedmlDataSetShapes in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/report\ncreating attribute sedmlId in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/report\ncreating attribute sedmlName in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/report\ncreating attribute uri in /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/report\ncreating attribute combineArchiveLocation in /3D-UngroupedModel-PLOS2012.sedml\ncreating attribute uri in /3D-UngroupedModel-PLOS2012.sedml\ncreating attribute _type in /3D-UngroupedModel-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /3D-UngroupedModel-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetIds in /3D-UngroupedModel-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetLabels in /3D-UngroupedModel-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetNames in /3D-UngroupedModel-PLOS2012.sedml/plot\ncreating attribute sedmlDataSetShapes in /3D-UngroupedModel-PLOS2012.sedml/plot\ncreating attribute sedmlId in /3D-UngroupedModel-PLOS2012.sedml/plot\ncreating attribute uri in /3D-UngroupedModel-PLOS2012.sedml/plot\ncreating attribute _type in /3D-UngroupedModel-PLOS2012.sedml/report\ncreating attribute sedmlDataSetDataTypes in /3D-UngroupedModel-PLOS2012.sedml/report\ncreating attribute sedmlDataSetIds in /3D-UngroupedModel-PLOS2012.sedml/report\ncreating attribute sedmlDataSetLabels in /3D-UngroupedModel-PLOS2012.sedml/report\ncreating attribute sedmlDataSetNames in /3D-UngroupedModel-PLOS2012.sedml/report\ncreating attribute sedmlDataSetShapes in /3D-UngroupedModel-PLOS2012.sedml/report\ncreating attribute sedmlId in /3D-UngroupedModel-PLOS2012.sedml/report\ncreating attribute sedmlName in /3D-UngroupedModel-PLOS2012.sedml/report\ncreating attribute uri in /3D-UngroupedModel-PLOS2012.sedml/report\ncreate_links: /\ngot link: 2D-BaseModel-PLOS2012.sedml\ngot link: 3D-BaseModel +Noise+Adaptation-PLOS2012.sedml\ngot link: 3D-BaseModel+SlowNaInactivation-PLOS2012.sedml\ngot link: 3D-UngroupedModel-PLOS2012.sedml\ncreate_links: /2D-BaseModel-PLOS2012.sedml\ngot link: plot\ngot link: report\ncreate_links: /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml\ngot link: plot\ngot link: report\ncreate_links: /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml\ngot link: plot\ngot link: report\ncreate_links: /3D-UngroupedModel-PLOS2012.sedml\ngot link: plot\ngot link: report\nwrite_dataset src: /2D-BaseModel-PLOS2012.sedml/plot to tgt: /2D-BaseModel-PLOS2012.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /2D-BaseModel-PLOS2012.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /2D-BaseModel-PLOS2012.sedml/plot\nwrite_dataset src: /2D-BaseModel-PLOS2012.sedml/report to tgt: /2D-BaseModel-PLOS2012.sedml/report, shape: (3, 1001), type: float64\niterating over chunks for /2D-BaseModel-PLOS2012.sedml/report\nwriting dataset data for slice: (slice(0, 3, 1), slice(0, 1001, 1))\ndone with dataload for /2D-BaseModel-PLOS2012.sedml/report\nwrite_dataset src: /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot to tgt: /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot\nwrite_dataset src: /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/report to tgt: /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/report, shape: (4, 1001), type: float64\niterating over chunks for /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/report\nwriting dataset data for slice: (slice(0, 4, 1), slice(0, 1001, 1))\ndone with dataload for /3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/report\nwrite_dataset src: /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot to tgt: /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot\nwrite_dataset src: /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/report to tgt: /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/report, shape: (4, 1001), type: float64\niterating over chunks for /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/report\nwriting dataset data for slice: (slice(0, 4, 1), slice(0, 1001, 1))\ndone with dataload for /3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/report\nwrite_dataset src: /3D-UngroupedModel-PLOS2012.sedml/plot to tgt: /3D-UngroupedModel-PLOS2012.sedml/plot, shape: (2, 1001), type: float64\niterating over chunks for /3D-UngroupedModel-PLOS2012.sedml/plot\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /3D-UngroupedModel-PLOS2012.sedml/plot\nwrite_dataset src: /3D-UngroupedModel-PLOS2012.sedml/report to tgt: /3D-UngroupedModel-PLOS2012.sedml/report, shape: (5, 1001), type: float64\niterating over chunks for /3D-UngroupedModel-PLOS2012.sedml/report\nwriting dataset data for slice: (slice(0, 5, 1), slice(0, 1001, 1))\ndone with dataload for /3D-UngroupedModel-PLOS2012.sedml/report\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/621d42b7d8a14a834cbf3ebf\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 85%)\n  adding: outputs/2D-BaseModel-PLOS2012.sedml/ (stored 0%)\n  adding: outputs/2D-BaseModel-PLOS2012.sedml/plot.pdf (deflated 36%)\n  adding: outputs/3D-UngroupedModel-PLOS2012.sedml/ (stored 0%)\n  adding: outputs/3D-UngroupedModel-PLOS2012.sedml/plot.pdf (deflated 36%)\n  adding: outputs/3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/ (stored 0%)\n  adding: outputs/3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot.pdf (deflated 14%)\n  adding: outputs/3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/ (stored 0%)\n  adding: outputs/3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot.pdf (deflated 14%)\n  adding: outputs/reports.h5 (deflated 51%)\n  adding: rawLog.txt (deflated 88%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 125.6 KiB/243.2 KiB (1.4 MiB/s) with 7 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/output.zip\nCompleted 125.6 KiB/243.2 KiB (1.4 MiB/s) with 6 file(s) remaining\rCompleted 143.8 KiB/243.2 KiB (1.3 MiB/s) with 6 file(s) remaining\rupload: outputs/3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/outputs/3D-BaseModel+SlowNaInactivation-PLOS2012.sedml/plot.pdf\nCompleted 143.8 KiB/243.2 KiB (1.3 MiB/s) with 5 file(s) remaining\rCompleted 162.0 KiB/243.2 KiB (1.5 MiB/s) with 5 file(s) remaining\rupload: outputs/3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/outputs/3D-BaseModel +Noise+Adaptation-PLOS2012.sedml/plot.pdf\nCompleted 162.0 KiB/243.2 KiB (1.5 MiB/s) with 4 file(s) remaining\rCompleted 169.6 KiB/243.2 KiB (1.5 MiB/s) with 4 file(s) remaining\rupload: outputs/2D-BaseModel-PLOS2012.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/outputs/2D-BaseModel-PLOS2012.sedml/plot.pdf\nCompleted 169.6 KiB/243.2 KiB (1.5 MiB/s) with 3 file(s) remaining\rCompleted 177.2 KiB/243.2 KiB (1.4 MiB/s) with 3 file(s) remaining\rupload: outputs/3D-UngroupedModel-PLOS2012.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/outputs/3D-UngroupedModel-PLOS2012.sedml/plot.pdf\nCompleted 177.2 KiB/243.2 KiB (1.4 MiB/s) with 2 file(s) remaining\rCompleted 202.7 KiB/243.2 KiB (1.4 MiB/s) with 2 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/rawLog.txt\nCompleted 202.7 KiB/243.2 KiB (1.4 MiB/s) with 1 file(s) remaining\rCompleted 243.2 KiB/243.2 KiB (1.4 MiB/s) with 1 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/outputs/plots.zip\nCompleted 158.4 KiB/158.4 KiB (1.9 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/outputs/reports.h5\nCompleted 7.5 KiB/7.5 KiB (117.3 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/621d42b7d8a14a834cbf3ebf/outputs/log.yml\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","skipReason":null,"exception":null,"status":"SUCCEEDED"}