{"sedDocuments":[{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_CLI"},{"status":"SUCCEEDED","id":"data_set_KI"},{"status":"SUCCEEDED","id":"data_set_N"},{"status":"SUCCEEDED","id":"data_set_V"},{"status":"SUCCEEDED","id":"data_set__CLE"},{"status":"SUCCEEDED","id":"data_set__ECL"},{"status":"SUCCEEDED","id":"data_set__EK"},{"status":"SUCCEEDED","id":"data_set__ENA"},{"status":"SUCCEEDED","id":"data_set__IPUMP"},{"status":"SUCCEEDED","id":"data_set__I_CL_L"},{"status":"SUCCEEDED","id":"data_set__I_K"},{"status":"SUCCEEDED","id":"data_set__I_K_G"},{"status":"SUCCEEDED","id":"data_set__I_K_L"},{"status":"SUCCEEDED","id":"data_set__I_NA"},{"status":"SUCCEEDED","id":"data_set__I_NA_G"},{"status":"SUCCEEDED","id":"data_set__I_NA_L"},{"status":"SUCCEEDED","id":"data_set__KE"},{"status":"SUCCEEDED","id":"data_set__NAE"},{"status":"SUCCEEDED","id":"data_set__NAI"}],"duration":0.166127,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"},{"status":"SUCCEEDED","id":"curve_2"},{"status":"SUCCEEDED","id":"curve_3"}],"duration":0.208522,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/viz/io.py:96: UserWarning: The handle <matplotlib.lines.Line2D object at 0x7fffe583a790> has a label of '_EK vs T' which cannot be automatically added to the legend.\r\n  axes.legend(curve_names)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/viz/io.py:96: UserWarning: The handle <matplotlib.lines.Line2D object at 0x7fffe583aa60> has a label of '_ENA vs T' which cannot be automatically added to the legend.\r\n  axes.legend(curve_names)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"stiff","key":"meth"},{"value":"500.0","key":"total"},{"value":"0.0","key":"t0"},{"value":"0.5","key":"dt"},{"value":"1","key":"njmp"}],"algorithm":"KISAO_0000668","duration":0.105541,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":0.619327,"output":"Archive contains 2 SED-ML documents with 2 models, 2 simulations, 2 tasks, 2 reports, and 2 plots:\r\n  spreading-depression-bistable-cont.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 20 data sets\r\n    Plots (1):\r\n      plot: 3 curves\r\n  spreading-depression.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 23 data sets\r\n    Plots (1):\r\n      plot: 4 curves\r\n\r\nExecuting SED-ML file 1: spreading-depression-bistable-cont.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"spreading-depression-bistable-cont.sedml"},{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T"},{"status":"SUCCEEDED","id":"data_set_CLI"},{"status":"SUCCEEDED","id":"data_set_DK"},{"status":"SUCCEEDED","id":"data_set_KI"},{"status":"SUCCEEDED","id":"data_set_N"},{"status":"SUCCEEDED","id":"data_set_STIM"},{"status":"SUCCEEDED","id":"data_set_V"},{"status":"SUCCEEDED","id":"data_set_Z"},{"status":"SUCCEEDED","id":"data_set__CLE"},{"status":"SUCCEEDED","id":"data_set__ECL"},{"status":"SUCCEEDED","id":"data_set__EK"},{"status":"SUCCEEDED","id":"data_set__ENA"},{"status":"SUCCEEDED","id":"data_set__IPUMP"},{"status":"SUCCEEDED","id":"data_set__I_CL_L"},{"status":"SUCCEEDED","id":"data_set__I_K"},{"status":"SUCCEEDED","id":"data_set__I_K_G"},{"status":"SUCCEEDED","id":"data_set__I_K_L"},{"status":"SUCCEEDED","id":"data_set__I_NA"},{"status":"SUCCEEDED","id":"data_set__I_NA_G"},{"status":"SUCCEEDED","id":"data_set__I_NA_L"},{"status":"SUCCEEDED","id":"data_set__KE"},{"status":"SUCCEEDED","id":"data_set__NAE"},{"status":"SUCCEEDED","id":"data_set__NAI"}],"duration":0.195451,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report"},{"curves":[{"status":"SUCCEEDED","id":"curve_1"},{"status":"SUCCEEDED","id":"curve_2"},{"status":"SUCCEEDED","id":"curve_3"},{"status":"SUCCEEDED","id":"curve_4"}],"duration":0.203447,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: IllogicalVizWarning: \u001b[33mA title could not be inferred for the Y axis because the Y data generators have inconsistent names.\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/viz/io.py:96: UserWarning: The handle <matplotlib.lines.Line2D object at 0x7fffe5c9c2b0> has a label of '_EK vs T' which cannot be automatically added to the legend.\r\n  axes.legend(curve_names)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/viz/io.py:96: UserWarning: The handle <matplotlib.lines.Line2D object at 0x7fffe5c9c460> has a label of '_ENA vs T' which cannot be automatically added to the legend.\r\n  axes.legend(curve_names)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/viz/io.py:96: UserWarning: The handle <matplotlib.lines.Line2D object at 0x7fffe5c9c730> has a label of '_ECL vs T' which cannot be automatically added to the legend.\r\n  axes.legend(curve_names)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot"}],"tasks":[{"simulatorDetails":[{"value":"stiff","key":"meth"},{"value":"500.0","key":"total"},{"value":"0.0","key":"t0"},{"value":"0.5","key":"dt"},{"value":"1","key":"njmp"}],"algorithm":"KISAO_0000668","duration":0.111919,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task"}],"duration":0.666353,"output":" \u001b[34msucceeded\u001b[0m\r\n\r\n  Executed 1 tasks and 2 outputs:\r\n    Tasks:\r\n      Succeeded: 1\r\n      Skipped: 0\r\n      Failed: 0\r\n    Outputs:\r\n      Succeeded: 2\r\n      Skipped: 0\r\n      Failed: 0\r\nExecuting SED-ML file 2: spreading-depression.sedml ...\r\n  Found 1 tasks and 2 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `plot`\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 2 outputs ...\r\n      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"spreading-depression.sedml"}],"duration":1.768657,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    475      0 --:--:-- --:--:-- --:--:--   476\n\r100 1086k  100 1086k    0     0  2489k      0 --:--:-- --:--:-- --:--:-- 2489k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive has warnings.\r\n  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 2 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 2\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 2 SED documents:\n  SED documents (2):\n    Succeeded: 2\n    Skipped: 0\n    Failed: 0\n  Tasks (2):\n    Succeeded: 2\n    Skipped: 0\n    Failed: 0\n  Outputs (4):\n    Succeeded: 4\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/readme.txt     \n  inflating: contents/spreading-depression-bistable-cont.ode  \n  inflating: contents/spreading-depression.ode  \n  inflating: contents/spreading-depression-bistable-cont.sedml  \n  inflating: contents/spreading-depression.sedml  \n  inflating: contents/metadata.rdf   \n  inflating: contents/article-figures/PMC4256015/pcbi.1003941.g001.jpg  \n  inflating: contents/article-figures/PMC4256015/pcbi.1003941.g002.jpg  \n  inflating: contents/article-figures/PMC4256015/pcbi.1003941.g003.jpg  \n  inflating: contents/article-figures/PMC4256015/pcbi.1003941.g004.jpg  \n  inflating: contents/article-figures/PMC4256015/pcbi.1003941.g005.jpg  \n  inflating: contents/article-figures/PMC4256015/pcbi.1003941.g006.jpg  \n  inflating: contents/article-figures/PMC4256015/pcbi.1003941.g007.jpg  \n  inflating: contents/article-figures/PMC4256015/pcbi.1003941.g008.jpg  \n  inflating: contents/article-figures/PMC4256015/pcbi.1003941.g009.jpg  \n  inflating: contents/article-figures/PMC4256015/pcbi.1003941.g010.jpg  \n  inflating: contents/article-figures/PMC4256015/pcbi.1003941.g011.jpg  \n  inflating: contents/manifest.xml   \nCompleted 92.0 KiB/1.2 MiB (1.1 MiB/s) with 18 file(s) remaining\rupload: contents/article-figures/PMC4256015/pcbi.1003941.g001.jpg to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/article-figures/PMC4256015/pcbi.1003941.g001.jpg\nCompleted 92.0 KiB/1.2 MiB (1.1 MiB/s) with 17 file(s) remaining\rCompleted 183.5 KiB/1.2 MiB (1.4 MiB/s) with 17 file(s) remaining\rupload: contents/article-figures/PMC4256015/pcbi.1003941.g008.jpg to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/article-figures/PMC4256015/pcbi.1003941.g008.jpg\nCompleted 183.5 KiB/1.2 MiB (1.4 MiB/s) with 16 file(s) remaining\rCompleted 292.8 KiB/1.2 MiB (1.9 MiB/s) with 16 file(s) remaining\rupload: contents/article-figures/PMC4256015/pcbi.1003941.g006.jpg to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/article-figures/PMC4256015/pcbi.1003941.g006.jpg\nCompleted 292.8 KiB/1.2 MiB (1.9 MiB/s) with 15 file(s) remaining\rCompleted 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MiB (4.2 MiB/s) with 12 file(s) remaining\rupload: contents/article-figures/PMC4256015/pcbi.1003941.g007.jpg to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/article-figures/PMC4256015/pcbi.1003941.g007.jpg\nCompleted 800.9 KiB/1.2 MiB (4.2 MiB/s) with 11 file(s) remaining\rCompleted 849.7 KiB/1.2 MiB (4.4 MiB/s) with 11 file(s) remaining\rupload: contents/article-figures/PMC4256015/pcbi.1003941.g011.jpg to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/article-figures/PMC4256015/pcbi.1003941.g011.jpg\nCompleted 849.7 KiB/1.2 MiB (4.4 MiB/s) with 10 file(s) remaining\rCompleted 860.6 KiB/1.2 MiB (4.2 MiB/s) with 10 file(s) remaining\rupload: contents/spreading-depression-bistable-cont.sedml to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/spreading-depression-bistable-cont.sedml\nCompleted 860.6 KiB/1.2 MiB (4.2 MiB/s) with 9 file(s) remaining\rCompleted 926.0 KiB/1.2 MiB (4.3 MiB/s) with 9 file(s) remaining\rupload: contents/article-figures/PMC4256015/pcbi.1003941.g010.jpg to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/article-figures/PMC4256015/pcbi.1003941.g010.jpg\nCompleted 926.0 KiB/1.2 MiB (4.3 MiB/s) with 8 file(s) remaining\rCompleted 938.7 KiB/1.2 MiB (4.4 MiB/s) with 8 file(s) remaining\rupload: contents/spreading-depression.sedml to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/spreading-depression.sedml\nCompleted 938.7 KiB/1.2 MiB (4.4 MiB/s) with 7 file(s) remaining\rCompleted 1.1 MiB/1.2 MiB (4.5 MiB/s) with 7 file(s) remaining  \rupload: contents/article-figures/PMC4256015/pcbi.1003941.g002.jpg to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/article-figures/PMC4256015/pcbi.1003941.g002.jpg\nCompleted 1.1 MiB/1.2 MiB (4.5 MiB/s) with 6 file(s) remaining\rCompleted 1.1 MiB/1.2 MiB (4.5 MiB/s) with 6 file(s) remaining\rupload: contents/spreading-depression.ode to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/spreading-depression.ode\nCompleted 1.1 MiB/1.2 MiB (4.5 MiB/s) with 5 file(s) remaining\rCompleted 1.1 MiB/1.2 MiB (4.2 MiB/s) with 5 file(s) remaining\rupload: contents/readme.txt to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/readme.txt\nCompleted 1.1 MiB/1.2 MiB (4.2 MiB/s) with 4 file(s) remaining\rCompleted 1.1 MiB/1.2 MiB (3.9 MiB/s) with 4 file(s) remaining\rupload: contents/spreading-depression-bistable-cont.ode to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/spreading-depression-bistable-cont.ode\nCompleted 1.1 MiB/1.2 MiB (3.9 MiB/s) with 3 file(s) remaining\rCompleted 1.2 MiB/1.2 MiB (4.2 MiB/s) with 3 file(s) remaining\rupload: contents/article-figures/PMC4256015/pcbi.1003941.g005.jpg to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/article-figures/PMC4256015/pcbi.1003941.g005.jpg\nCompleted 1.2 MiB/1.2 MiB (4.2 MiB/s) with 2 file(s) remaining\rCompleted 1.2 MiB/1.2 MiB (4.2 MiB/s) with 2 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/manifest.xml\nCompleted 1.2 MiB/1.2 MiB (4.2 MiB/s) with 1 file(s) remaining\rCompleted 1.2 MiB/1.2 MiB (4.0 MiB/s) with 1 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/contents/metadata.rdf\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /spreading-depression-bistable-cont.sedml\ncreating dataset /spreading-depression-bistable-cont.sedml/plot, shape: (4, 1001), type: float64\ndataset created, uuid: d-127cb827-a0f416f8-97e0-994de2-ca3d83, chunk_size: (4, 1001)\ncreating dataset /spreading-depression-bistable-cont.sedml/report, shape: (20, 1001), type: float64\ndataset created, uuid: d-127cb827-a0f416f8-5b7a-f0e349-b6bca4, chunk_size: (20, 1001)\ncreating group /spreading-depression.sedml\ncreating dataset /spreading-depression.sedml/plot, shape: (5, 1001), type: float64\ndataset created, uuid: d-127cb827-a0f416f8-bb93-bfb9be-7d6e02, chunk_size: (5, 1001)\ncreating dataset /spreading-depression.sedml/report, shape: (23, 1001), type: float64\ndataset created, uuid: d-127cb827-a0f416f8-3613-e6f8ef-529440, chunk_size: (23, 1001)\ncreating attribute combineArchiveLocation in /spreading-depression-bistable-cont.sedml\ncreating attribute uri in /spreading-depression-bistable-cont.sedml\ncreating attribute _type in /spreading-depression-bistable-cont.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /spreading-depression-bistable-cont.sedml/plot\ncreating attribute sedmlDataSetIds in /spreading-depression-bistable-cont.sedml/plot\ncreating attribute sedmlDataSetLabels in /spreading-depression-bistable-cont.sedml/plot\ncreating attribute sedmlDataSetNames in /spreading-depression-bistable-cont.sedml/plot\ncreating attribute sedmlDataSetShapes in /spreading-depression-bistable-cont.sedml/plot\ncreating attribute sedmlId in /spreading-depression-bistable-cont.sedml/plot\ncreating attribute uri in /spreading-depression-bistable-cont.sedml/plot\ncreating attribute _type in /spreading-depression-bistable-cont.sedml/report\ncreating attribute sedmlDataSetDataTypes in /spreading-depression-bistable-cont.sedml/report\ncreating attribute sedmlDataSetIds in /spreading-depression-bistable-cont.sedml/report\ncreating attribute sedmlDataSetLabels in /spreading-depression-bistable-cont.sedml/report\ncreating attribute sedmlDataSetNames in /spreading-depression-bistable-cont.sedml/report\ncreating attribute sedmlDataSetShapes in /spreading-depression-bistable-cont.sedml/report\ncreating attribute sedmlId in /spreading-depression-bistable-cont.sedml/report\ncreating attribute sedmlName in /spreading-depression-bistable-cont.sedml/report\ncreating attribute uri in /spreading-depression-bistable-cont.sedml/report\ncreating attribute combineArchiveLocation in /spreading-depression.sedml\ncreating attribute uri in /spreading-depression.sedml\ncreating attribute _type in /spreading-depression.sedml/plot\ncreating attribute sedmlDataSetDataTypes in /spreading-depression.sedml/plot\ncreating attribute sedmlDataSetIds in /spreading-depression.sedml/plot\ncreating attribute sedmlDataSetLabels in /spreading-depression.sedml/plot\ncreating attribute sedmlDataSetNames in /spreading-depression.sedml/plot\ncreating attribute sedmlDataSetShapes in /spreading-depression.sedml/plot\ncreating attribute sedmlId in /spreading-depression.sedml/plot\ncreating attribute uri in /spreading-depression.sedml/plot\ncreating attribute _type in /spreading-depression.sedml/report\ncreating attribute sedmlDataSetDataTypes in /spreading-depression.sedml/report\ncreating attribute sedmlDataSetIds in /spreading-depression.sedml/report\ncreating attribute sedmlDataSetLabels in /spreading-depression.sedml/report\ncreating attribute sedmlDataSetNames in /spreading-depression.sedml/report\ncreating attribute sedmlDataSetShapes in /spreading-depression.sedml/report\ncreating attribute sedmlId in /spreading-depression.sedml/report\ncreating attribute sedmlName in /spreading-depression.sedml/report\ncreating attribute uri in /spreading-depression.sedml/report\ncreate_links: /\ngot link: spreading-depression-bistable-cont.sedml\ngot link: spreading-depression.sedml\ncreate_links: /spreading-depression-bistable-cont.sedml\ngot link: plot\ngot link: report\ncreate_links: /spreading-depression.sedml\ngot link: plot\ngot link: report\nwrite_dataset src: /spreading-depression-bistable-cont.sedml/plot to tgt: /spreading-depression-bistable-cont.sedml/plot, shape: (4, 1001), type: float64\niterating over chunks for /spreading-depression-bistable-cont.sedml/plot\nwriting dataset data for slice: (slice(0, 4, 1), slice(0, 1001, 1))\ndone with dataload for /spreading-depression-bistable-cont.sedml/plot\nwrite_dataset src: /spreading-depression-bistable-cont.sedml/report to tgt: /spreading-depression-bistable-cont.sedml/report, shape: (20, 1001), type: float64\niterating over chunks for /spreading-depression-bistable-cont.sedml/report\nwriting dataset data for slice: (slice(0, 20, 1), slice(0, 1001, 1))\ndone with dataload for /spreading-depression-bistable-cont.sedml/report\nwrite_dataset src: /spreading-depression.sedml/plot to tgt: /spreading-depression.sedml/plot, shape: (5, 1001), type: float64\niterating over chunks for /spreading-depression.sedml/plot\nwriting dataset data for slice: (slice(0, 5, 1), slice(0, 1001, 1))\ndone with dataload for /spreading-depression.sedml/plot\nwrite_dataset src: /spreading-depression.sedml/report to tgt: /spreading-depression.sedml/report, shape: (23, 1001), type: float64\niterating over chunks for /spreading-depression.sedml/report\nwriting dataset data for slice: (slice(0, 23, 1), slice(0, 1001, 1))\ndone with dataload for /spreading-depression.sedml/report\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/621d42b5d8a14a834cbf3ea3\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 83%)\n  adding: outputs/reports.h5 (deflated 17%)\n  adding: outputs/spreading-depression-bistable-cont.sedml/ (stored 0%)\n  adding: outputs/spreading-depression-bistable-cont.sedml/plot.pdf (deflated 35%)\n  adding: outputs/spreading-depression.sedml/ (stored 0%)\n  adding: outputs/spreading-depression.sedml/plot.pdf (deflated 35%)\n  adding: rawLog.txt (deflated 86%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 10.4 KiB/247.8 KiB (118.8 KiB/s) with 5 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/outputs/plots.zip\nCompleted 10.4 KiB/247.8 KiB (118.8 KiB/s) with 4 file(s) remaining\rCompleted 18.5 KiB/247.8 KiB (187.5 KiB/s) with 4 file(s) remaining\rupload: outputs/spreading-depression-bistable-cont.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/outputs/spreading-depression-bistable-cont.sedml/plot.pdf\nCompleted 18.5 KiB/247.8 KiB (187.5 KiB/s) with 3 file(s) remaining\rCompleted 26.7 KiB/247.8 KiB (264.9 KiB/s) with 3 file(s) remaining\rupload: outputs/spreading-depression.sedml/plot.pdf to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/outputs/spreading-depression.sedml/plot.pdf\nCompleted 26.7 KiB/247.8 KiB (264.9 KiB/s) with 2 file(s) remaining\rCompleted 41.0 KiB/247.8 KiB (393.5 KiB/s) with 2 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/rawLog.txt\nCompleted 41.0 KiB/247.8 KiB (393.5 KiB/s) with 1 file(s) remaining\rCompleted 247.8 KiB/247.8 KiB (2.1 MiB/s) with 1 file(s) remaining \rupload: ./output.zip to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/output.zip\nCompleted 232.1 KiB/232.1 KiB (2.8 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/outputs/reports.h5\nCompleted 7.8 KiB/7.8 KiB (151.4 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/621d42b5d8a14a834cbf3ea3/outputs/log.yml\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","skipReason":null,"exception":null,"status":"SUCCEEDED"}