{"sedDocuments":[{"outputs":[{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T_figure_2a"},{"status":"SUCCEEDED","id":"data_set_C_figure_2a"},{"status":"SUCCEEDED","id":"data_set_CE_figure_2a"},{"status":"SUCCEEDED","id":"data_set_H_figure_2a"},{"status":"SUCCEEDED","id":"data_set_ICAN_figure_2a"},{"status":"SUCCEEDED","id":"data_set_INAPS_figure_2a"},{"status":"SUCCEEDED","id":"data_set_L_figure_2a"},{"status":"SUCCEEDED","id":"data_set_N_figure_2a"},{"status":"SUCCEEDED","id":"data_set_V_figure_2a"}],"duration":0.101093,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report_figure_2a"},{"curves":[{"status":"SUCCEEDED","id":"curve_1_figure_2a"}],"duration":0.158533,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot_figure_2a"},{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T_figure_2b"},{"status":"SUCCEEDED","id":"data_set_C_figure_2b"},{"status":"SUCCEEDED","id":"data_set_CE_figure_2b"},{"status":"SUCCEEDED","id":"data_set_H_figure_2b"},{"status":"SUCCEEDED","id":"data_set_ICAN_figure_2b"},{"status":"SUCCEEDED","id":"data_set_INAPS_figure_2b"},{"status":"SUCCEEDED","id":"data_set_L_figure_2b"},{"status":"SUCCEEDED","id":"data_set_N_figure_2b"},{"status":"SUCCEEDED","id":"data_set_V_figure_2b"}],"duration":0.101021,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report_figure_2b"},{"curves":[{"status":"SUCCEEDED","id":"curve_1_figure_2b"}],"duration":0.131097,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot_figure_2b"},{"dataSets":[{"status":"SUCCEEDED","id":"data_set_T_figure_2c"},{"status":"SUCCEEDED","id":"data_set_C_figure_2c"},{"status":"SUCCEEDED","id":"data_set_CE_figure_2c"},{"status":"SUCCEEDED","id":"data_set_H_figure_2c"},{"status":"SUCCEEDED","id":"data_set_ICAN_figure_2c"},{"status":"SUCCEEDED","id":"data_set_INAPS_figure_2c"},{"status":"SUCCEEDED","id":"data_set_L_figure_2c"},{"status":"SUCCEEDED","id":"data_set_N_figure_2c"},{"status":"SUCCEEDED","id":"data_set_V_figure_2c"}],"duration":0.099252,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"report_figure_2c"},{"curves":[{"status":"SUCCEEDED","id":"curve_1_figure_2c"}],"duration":0.129514,"output":"","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"plot_figure_2c"}],"tasks":[{"simulatorDetails":[{"value":"10000.0","key":"total"},{"value":"qualrk","key":"meth"},{"value":1e-12,"key":"dtmin"},{"value":"1","key":"dtmax"},{"value":"0.001","key":"toler"},{"value":"0.001","key":"newt_tol"},{"value":"0.0","key":"t0"},{"value":"10","key":"dt"},{"value":"1","key":"njmp"}],"algorithm":"KISAO_0000672","duration":0.098238,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model_figure_2a` may be invalid.\r\n  - The model file `/tmp/tmp7asr828p/OneCellTwoOsc.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - CE is a duplicate name\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task_figure_2a"},{"simulatorDetails":[{"value":"10000.0","key":"total"},{"value":"qualrk","key":"meth"},{"value":1e-12,"key":"dtmin"},{"value":"1","key":"dtmax"},{"value":"0.001","key":"toler"},{"value":"0.001","key":"newt_tol"},{"value":"0.0","key":"t0"},{"value":"10","key":"dt"},{"value":"1","key":"njmp"}],"algorithm":"KISAO_0000672","duration":0.108385,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model_figure_2b` may be invalid.\r\n  - The model file `/tmp/tmp7asr828p/OneCellTwoOsc.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - CE is a duplicate name\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task_figure_2b"},{"simulatorDetails":[{"value":"10000.0","key":"total"},{"value":"qualrk","key":"meth"},{"value":1e-12,"key":"dtmin"},{"value":"1","key":"dtmax"},{"value":"0.001","key":"toler"},{"value":"0.001","key":"newt_tol"},{"value":"0.0","key":"t0"},{"value":"10","key":"dt"},{"value":"1","key":"njmp"}],"algorithm":"KISAO_0000672","duration":0.094934,"output":"/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `model_figure_2c` may be invalid.\r\n  - The model file `/tmp/tmp7asr828p/OneCellTwoOsc.ode` has warnings.\r\n    - The XPP file may be not be formulated correctly\r\n      - CE is a duplicate name\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n","skipReason":null,"exception":null,"status":"SUCCEEDED","id":"task_figure_2c"}],"duration":2.08776,"output":"Archive contains 1 SED-ML documents with 4 models, 1 simulations, 3 tasks, 3 reports, and 3 plots:\r\n  OneCellTwoOsc.sedml:\r\n    Tasks (3):\r\n      task_figure_2a\r\n      task_figure_2b\r\n      task_figure_2c\r\n    Reports (3):\r\n      report_figure_2a: 9 data sets\r\n      report_figure_2b: 9 data sets\r\n      report_figure_2c: 9 data sets\r\n    Plots (3):\r\n      plot_figure_2a: 1 curves\r\n      plot_figure_2b: 1 curves\r\n      plot_figure_2c: 1 curves\r\n\r\nExecuting SED-ML file 1: OneCellTwoOsc.sedml ...\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `OneCellTwoOsc.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - CE is a duplicate name\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n  Found 3 tasks and 6 outputs:\r\n    Tasks:\r\n      `task_figure_2a`\r\n      `task_figure_2b`\r\n      `task_figure_2c`\r\n    Outputs:\r\n      `plot_figure_2a`\r\n      `plot_figure_2b`\r\n      `plot_figure_2c`\r\n      `report_figure_2a`\r\n      `report_figure_2b`\r\n      `report_figure_2c`\r\n  Executing task 1: `task_figure_2a`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 6 outputs ...\r\n      Generating output 1: `report_figure_2a` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot_figure_2a` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 3: `report_figure_2b` ... \u001b[36mqueued\u001b[0m\r\n      Generating output 4: `plot_figure_2b` ... \u001b[36mqueued\u001b[0m\r\n      Generating output 5: `report_figure_2c` ... \u001b[36mqueued\u001b[0m\r\n      Generating output 6: `plot_figure_2c` ... \u001b[36mqueued\u001b[0m\r\n  Executing task 2: `task_figure_2b`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 6 outputs ...\r\n      Generating output 1: `report_figure_2a` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot_figure_2a` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 3: `report_figure_2b` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 4: `plot_figure_2b` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 5: `report_figure_2c` ... \u001b[36mqueued\u001b[0m\r\n      Generating output 6: `plot_figure_2c` ... \u001b[36mqueued\u001b[0m\r\n  Executing task 3: `task_figure_2c`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 6 outputs ...\r\n      Generating output 1: `report_figure_2a` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 2: `plot_figure_2a` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 3: `report_figure_2b` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 4: `plot_figure_2b` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 5: `report_figure_2c` ... \u001b[34msucceeded\u001b[0m\r\n      Generating output 6: `plot_figure_2c` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"OneCellTwoOsc.sedml"}],"duration":2.439248,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    474      0 --:--:-- --:--:-- --:--:--   474\r100   139  100   139    0     0    470      0 --:--:-- --:--:-- --:--:--   469\n\r100  149k  100  149k    0     0   358k      0 --:--:-- --:--:-- --:--:--  358k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive has warnings.\r\n  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe SED document is potentially incorrect.\r\n  - Model `model` has warnings.\r\n    - The model file `OneCellTwoOsc.ode` has warnings.\r\n      - The XPP file may be not be formulated correctly\r\n        - CE is a duplicate name\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mThe COMBINE/OMEX archive has warnings.\r\n  - The SED-ML file at location `OneCellTwoOsc.sedml` has warnings.\r\n    - Model `model` has warnings.\r\n      - The model file `OneCellTwoOsc.ode` has warnings.\r\n        - The XPP file may be not be formulated correctly\r\n          - CE is a duplicate name\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n \u001b[34msucceeded\u001b[0m\n\n  Executed 3 tasks and 6 outputs:\n    Tasks:\n      Succeeded: 3\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 6\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n  SED documents (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Tasks (3):\n    Succeeded: 3\n    Skipped: 0\n    Failed: 0\n  Outputs (6):\n    Succeeded: 6\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/readme.html    \n  inflating: contents/OneCellTwoOsc.ode.setdb  \n  inflating: contents/OneCellTwoOsc.ode  \n  inflating: contents/OneCellTwoOsc.ode.setsb  \n  inflating: contents/OneCellTwoOsc.ode.setsdb  \n  inflating: contents/OneCellTwoOsc.sedml  \n  inflating: contents/metadata.rdf   \n  inflating: contents/fig2a.png      \n  inflating: contents/fig2b.png      \n  inflating: contents/fig2c.png      \n  inflating: contents/screenshot.png  \n  inflating: contents/manifest.xml   \nCompleted 3.3 KiB/214.5 KiB (52.1 KiB/s) with 12 file(s) remaining\rupload: contents/OneCellTwoOsc.ode.setdb to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/OneCellTwoOsc.ode.setdb\nCompleted 3.3 KiB/214.5 KiB (52.1 KiB/s) with 11 file(s) remaining\rCompleted 6.5 KiB/214.5 KiB (62.2 KiB/s) with 11 file(s) remaining\rupload: contents/OneCellTwoOsc.ode.setsb to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/OneCellTwoOsc.ode.setsb\nCompleted 6.5 KiB/214.5 KiB (62.2 KiB/s) with 10 file(s) remaining\rCompleted 23.6 KiB/214.5 KiB (192.1 KiB/s) with 10 file(s) remaining\rupload: contents/fig2b.png to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/fig2b.png\nCompleted 23.6 KiB/214.5 KiB (192.1 KiB/s) with 9 file(s) remaining\rCompleted 40.5 KiB/214.5 KiB (324.9 KiB/s) with 9 file(s) remaining\rupload: contents/fig2c.png to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/fig2c.png\nCompleted 40.5 KiB/214.5 KiB (324.9 KiB/s) with 8 file(s) remaining\rCompleted 42.1 KiB/214.5 KiB (323.4 KiB/s) with 8 file(s) remaining\rupload: contents/OneCellTwoOsc.ode to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/OneCellTwoOsc.ode\nCompleted 42.1 KiB/214.5 KiB (323.4 KiB/s) with 7 file(s) remaining\rCompleted 43.2 KiB/214.5 KiB (326.8 KiB/s) with 7 file(s) remaining\rupload: contents/readme.html to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/readme.html\nCompleted 43.2 KiB/214.5 KiB (326.8 KiB/s) with 6 file(s) remaining\rCompleted 44.5 KiB/214.5 KiB (330.6 KiB/s) with 6 file(s) remaining\rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/manifest.xml\nCompleted 44.5 KiB/214.5 KiB (330.6 KiB/s) with 5 file(s) remaining\rCompleted 63.7 KiB/214.5 KiB (432.7 KiB/s) with 5 file(s) remaining\rupload: contents/OneCellTwoOsc.sedml to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/OneCellTwoOsc.sedml\nCompleted 63.7 KiB/214.5 KiB (432.7 KiB/s) with 4 file(s) remaining\rCompleted 172.9 KiB/214.5 KiB (1.1 MiB/s) with 4 file(s) remaining \rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/metadata.rdf\nCompleted 172.9 KiB/214.5 KiB (1.1 MiB/s) with 3 file(s) remaining\rCompleted 176.1 KiB/214.5 KiB (1.1 MiB/s) with 3 file(s) remaining\rupload: contents/OneCellTwoOsc.ode.setsdb to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/OneCellTwoOsc.ode.setsdb\nCompleted 176.1 KiB/214.5 KiB (1.1 MiB/s) with 2 file(s) remaining\rCompleted 195.2 KiB/214.5 KiB (1.1 MiB/s) with 2 file(s) remaining\rupload: contents/fig2a.png to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/fig2a.png\nCompleted 195.2 KiB/214.5 KiB (1.1 MiB/s) with 1 file(s) remaining\rCompleted 214.5 KiB/214.5 KiB (1.2 MiB/s) with 1 file(s) remaining\rupload: contents/screenshot.png to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/contents/screenshot.png\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /OneCellTwoOsc.sedml\ncreating dataset /OneCellTwoOsc.sedml/plot_figure_2a, shape: (2, 1001), type: float64\ndataset created, uuid: d-e44f8206-a9e03e2c-610c-b0f88a-7f7ea3, chunk_size: (2, 1001)\ncreating dataset /OneCellTwoOsc.sedml/plot_figure_2b, shape: (2, 1001), type: float64\ndataset created, uuid: d-e44f8206-a9e03e2c-40cf-a9ee10-7060d8, chunk_size: (2, 1001)\ncreating dataset /OneCellTwoOsc.sedml/plot_figure_2c, shape: (2, 1001), type: float64\ndataset created, uuid: d-e44f8206-a9e03e2c-87c5-aaac17-b08b5e, chunk_size: (2, 1001)\ncreating dataset /OneCellTwoOsc.sedml/report_figure_2a, shape: (9, 1001), type: float64\ndataset created, uuid: d-e44f8206-a9e03e2c-03c9-7d5066-ba2ae5, chunk_size: (9, 1001)\ncreating dataset /OneCellTwoOsc.sedml/report_figure_2b, shape: (9, 1001), type: float64\ndataset created, uuid: d-e44f8206-a9e03e2c-1a01-88aa5b-9a6ebb, chunk_size: (9, 1001)\ncreating dataset /OneCellTwoOsc.sedml/report_figure_2c, shape: (9, 1001), type: float64\ndataset created, uuid: d-e44f8206-a9e03e2c-0f05-690687-ec2ddd, chunk_size: (9, 1001)\ncreating attribute combineArchiveLocation in /OneCellTwoOsc.sedml\ncreating attribute uri in /OneCellTwoOsc.sedml\ncreating attribute _type in /OneCellTwoOsc.sedml/plot_figure_2a\ncreating attribute sedmlDataSetDataTypes in /OneCellTwoOsc.sedml/plot_figure_2a\ncreating attribute sedmlDataSetIds in /OneCellTwoOsc.sedml/plot_figure_2a\ncreating attribute sedmlDataSetLabels in /OneCellTwoOsc.sedml/plot_figure_2a\ncreating attribute sedmlDataSetNames in /OneCellTwoOsc.sedml/plot_figure_2a\ncreating attribute sedmlDataSetShapes in /OneCellTwoOsc.sedml/plot_figure_2a\ncreating attribute sedmlId in /OneCellTwoOsc.sedml/plot_figure_2a\ncreating attribute sedmlName in /OneCellTwoOsc.sedml/plot_figure_2a\ncreating attribute uri in /OneCellTwoOsc.sedml/plot_figure_2a\ncreating attribute _type in /OneCellTwoOsc.sedml/plot_figure_2b\ncreating attribute sedmlDataSetDataTypes in /OneCellTwoOsc.sedml/plot_figure_2b\ncreating attribute sedmlDataSetIds in /OneCellTwoOsc.sedml/plot_figure_2b\ncreating attribute sedmlDataSetLabels in /OneCellTwoOsc.sedml/plot_figure_2b\ncreating attribute sedmlDataSetNames in /OneCellTwoOsc.sedml/plot_figure_2b\ncreating attribute sedmlDataSetShapes in /OneCellTwoOsc.sedml/plot_figure_2b\ncreating attribute sedmlId in /OneCellTwoOsc.sedml/plot_figure_2b\ncreating attribute sedmlName in /OneCellTwoOsc.sedml/plot_figure_2b\ncreating attribute uri in /OneCellTwoOsc.sedml/plot_figure_2b\ncreating attribute _type in /OneCellTwoOsc.sedml/plot_figure_2c\ncreating attribute sedmlDataSetDataTypes in /OneCellTwoOsc.sedml/plot_figure_2c\ncreating attribute sedmlDataSetIds in /OneCellTwoOsc.sedml/plot_figure_2c\ncreating attribute sedmlDataSetLabels in /OneCellTwoOsc.sedml/plot_figure_2c\ncreating attribute sedmlDataSetNames in /OneCellTwoOsc.sedml/plot_figure_2c\ncreating attribute sedmlDataSetShapes in /OneCellTwoOsc.sedml/plot_figure_2c\ncreating attribute sedmlId in /OneCellTwoOsc.sedml/plot_figure_2c\ncreating attribute sedmlName in /OneCellTwoOsc.sedml/plot_figure_2c\ncreating attribute uri in /OneCellTwoOsc.sedml/plot_figure_2c\ncreating attribute _type in /OneCellTwoOsc.sedml/report_figure_2a\ncreating attribute sedmlDataSetDataTypes in /OneCellTwoOsc.sedml/report_figure_2a\ncreating attribute sedmlDataSetIds in /OneCellTwoOsc.sedml/report_figure_2a\ncreating attribute sedmlDataSetLabels in /OneCellTwoOsc.sedml/report_figure_2a\ncreating attribute sedmlDataSetNames in /OneCellTwoOsc.sedml/report_figure_2a\ncreating attribute sedmlDataSetShapes in /OneCellTwoOsc.sedml/report_figure_2a\ncreating attribute sedmlId in /OneCellTwoOsc.sedml/report_figure_2a\ncreating attribute sedmlName in /OneCellTwoOsc.sedml/report_figure_2a\ncreating attribute uri in /OneCellTwoOsc.sedml/report_figure_2a\ncreating attribute _type in /OneCellTwoOsc.sedml/report_figure_2b\ncreating attribute sedmlDataSetDataTypes in /OneCellTwoOsc.sedml/report_figure_2b\ncreating attribute sedmlDataSetIds in /OneCellTwoOsc.sedml/report_figure_2b\ncreating attribute sedmlDataSetLabels in /OneCellTwoOsc.sedml/report_figure_2b\ncreating attribute sedmlDataSetNames in /OneCellTwoOsc.sedml/report_figure_2b\ncreating attribute sedmlDataSetShapes in /OneCellTwoOsc.sedml/report_figure_2b\ncreating attribute sedmlId in /OneCellTwoOsc.sedml/report_figure_2b\ncreating attribute sedmlName in /OneCellTwoOsc.sedml/report_figure_2b\ncreating attribute uri in /OneCellTwoOsc.sedml/report_figure_2b\ncreating attribute _type in /OneCellTwoOsc.sedml/report_figure_2c\ncreating attribute sedmlDataSetDataTypes in /OneCellTwoOsc.sedml/report_figure_2c\ncreating attribute sedmlDataSetIds in /OneCellTwoOsc.sedml/report_figure_2c\ncreating attribute sedmlDataSetLabels in /OneCellTwoOsc.sedml/report_figure_2c\ncreating attribute sedmlDataSetNames in /OneCellTwoOsc.sedml/report_figure_2c\ncreating attribute sedmlDataSetShapes in /OneCellTwoOsc.sedml/report_figure_2c\ncreating attribute sedmlId in /OneCellTwoOsc.sedml/report_figure_2c\ncreating attribute sedmlName in /OneCellTwoOsc.sedml/report_figure_2c\ncreating attribute uri in /OneCellTwoOsc.sedml/report_figure_2c\ncreate_links: /\ngot link: OneCellTwoOsc.sedml\ncreate_links: /OneCellTwoOsc.sedml\ngot link: plot_figure_2a\ngot link: plot_figure_2b\ngot link: plot_figure_2c\ngot link: report_figure_2a\ngot link: report_figure_2b\ngot link: report_figure_2c\nwrite_dataset src: /OneCellTwoOsc.sedml/plot_figure_2a to tgt: /OneCellTwoOsc.sedml/plot_figure_2a, shape: (2, 1001), type: float64\niterating over chunks for /OneCellTwoOsc.sedml/plot_figure_2a\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /OneCellTwoOsc.sedml/plot_figure_2a\nwrite_dataset src: /OneCellTwoOsc.sedml/plot_figure_2b to tgt: /OneCellTwoOsc.sedml/plot_figure_2b, shape: (2, 1001), type: float64\niterating over chunks for /OneCellTwoOsc.sedml/plot_figure_2b\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /OneCellTwoOsc.sedml/plot_figure_2b\nwrite_dataset src: /OneCellTwoOsc.sedml/plot_figure_2c to tgt: /OneCellTwoOsc.sedml/plot_figure_2c, shape: (2, 1001), type: float64\niterating over chunks for /OneCellTwoOsc.sedml/plot_figure_2c\nwriting dataset data for slice: (slice(0, 2, 1), slice(0, 1001, 1))\ndone with dataload for /OneCellTwoOsc.sedml/plot_figure_2c\nwrite_dataset src: /OneCellTwoOsc.sedml/report_figure_2a to tgt: /OneCellTwoOsc.sedml/report_figure_2a, shape: (9, 1001), type: float64\niterating over chunks for /OneCellTwoOsc.sedml/report_figure_2a\nwriting dataset data for slice: (slice(0, 9, 1), slice(0, 1001, 1))\ndone with dataload for /OneCellTwoOsc.sedml/report_figure_2a\nwrite_dataset src: /OneCellTwoOsc.sedml/report_figure_2b to tgt: /OneCellTwoOsc.sedml/report_figure_2b, shape: (9, 1001), type: float64\niterating over chunks for /OneCellTwoOsc.sedml/report_figure_2b\nwriting dataset data for slice: (slice(0, 9, 1), slice(0, 1001, 1))\ndone with dataload for /OneCellTwoOsc.sedml/report_figure_2b\nwrite_dataset src: /OneCellTwoOsc.sedml/report_figure_2c to tgt: /OneCellTwoOsc.sedml/report_figure_2c, shape: (9, 1001), type: float64\niterating over chunks for /OneCellTwoOsc.sedml/report_figure_2c\nwriting dataset data for slice: (slice(0, 9, 1), slice(0, 1001, 1))\ndone with dataload for /OneCellTwoOsc.sedml/report_figure_2c\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/621d42b487550e369891bb28\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 86%)\n  adding: outputs/OneCellTwoOsc.sedml/ (stored 0%)\n  adding: outputs/OneCellTwoOsc.sedml/plot_figure_2a.pdf (deflated 21%)\n  adding: outputs/OneCellTwoOsc.sedml/plot_figure_2b.pdf (deflated 22%)\n  adding: outputs/OneCellTwoOsc.sedml/plot_figure_2c.pdf (deflated 26%)\n  adding: outputs/reports.h5 (deflated 32%)\n  adding: rawLog.txt (deflated 85%)\n\n\u001b[0;36m=================================================== Saving outputs ==================================================\u001b[0m\nCompleted 214.7 KiB/283.1 KiB (2.5 MiB/s) with 6 file(s) remaining\rupload: ./output.zip to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/output.zip\nCompleted 214.7 KiB/283.1 KiB (2.5 MiB/s) with 5 file(s) remaining\rCompleted 225.4 KiB/283.1 KiB (2.4 MiB/s) with 5 file(s) remaining\rupload: outputs/OneCellTwoOsc.sedml/plot_figure_2b.pdf to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/outputs/OneCellTwoOsc.sedml/plot_figure_2b.pdf\nCompleted 225.4 KiB/283.1 KiB (2.4 MiB/s) with 4 file(s) remaining\rCompleted 236.5 KiB/283.1 KiB (2.3 MiB/s) with 4 file(s) remaining\rupload: outputs/OneCellTwoOsc.sedml/plot_figure_2a.pdf to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/outputs/OneCellTwoOsc.sedml/plot_figure_2a.pdf\nCompleted 236.5 KiB/283.1 KiB (2.3 MiB/s) with 3 file(s) remaining\rCompleted 245.6 KiB/283.1 KiB (2.3 MiB/s) with 3 file(s) remaining\rupload: outputs/OneCellTwoOsc.sedml/plot_figure_2c.pdf to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/outputs/OneCellTwoOsc.sedml/plot_figure_2c.pdf\nCompleted 245.6 KiB/283.1 KiB (2.3 MiB/s) with 2 file(s) remaining\rCompleted 268.9 KiB/283.1 KiB (2.4 MiB/s) with 2 file(s) remaining\rupload: outputs/plots.zip to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/outputs/plots.zip\nCompleted 268.9 KiB/283.1 KiB (2.4 MiB/s) with 1 file(s) remaining\rCompleted 283.1 KiB/283.1 KiB (2.4 MiB/s) with 1 file(s) remaining\rupload: ./rawLog.txt to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/rawLog.txt\nCompleted 256.0 KiB/275.6 KiB (6.7 MiB/s) with 1 file(s) remaining\rCompleted 275.6 KiB/275.6 KiB (3.3 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/outputs/reports.h5\nCompleted 9.8 KiB/9.8 KiB (190.4 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/621d42b487550e369891bb28/outputs/log.yml\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","skipReason":null,"exception":null,"status":"SUCCEEDED"}