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contains 1 SED-ML documents with 1 models, 1 simulations, 1 tasks, 1 reports, and 0 plots:\r\n  hh200x50-LEV01.sedml:\r\n    Tasks (1):\r\n      task\r\n    Reports (1):\r\n      report: 1751 data sets\r\n\r\nExecuting SED-ML file 1: hh200x50-LEV01.sedml ...\r\n  Found 1 tasks and 1 outputs:\r\n    Tasks:\r\n      `task`\r\n    Outputs:\r\n      `report`\r\n  Executing task 1: `task`\r\n    Executing simulation ... \u001b[34msucceeded\u001b[0m\r\n    Generating 1 outputs ...\r\n      Generating output 1: `report` ...","skipReason":null,"exception":null,"status":"SUCCEEDED","location":"hh200x50-LEV01.sedml"}],"duration":26.147724,"output":"\u001b[0;36mThank you for using runBioSimulations!\u001b[0m\n\n\u001b[0;36m================================================ Loading Singularity ================================================\u001b[0m\n\n\u001b[0;36m========================================== Downloading COMBINE/OMEX archive =========================================\u001b[0m\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n                                 Dload  Upload   Total   Spent    Left  Speed\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100   139  100   139    0     0    467      0 --:--:-- --:--:-- --:--:--   468\n\r  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\r100  789k  100  789k    0     0  1845k      0 --:--:-- --:--:-- --:--:-- 9403k\n\n\u001b[0;36m=========================================== Executing COMBINE/OMEX archive ==========================================\u001b[0m\nINFO:    Using cached SIF image\n/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mCOMBINE/OMEX archive has warnings.\r\n  - The manifest does not include its parent COMBINE/OMEX archive. Manifests should include their parent COMBINE/OMEX archives.\u001b[0m\r\n  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\r\n \u001b[34msucceeded\u001b[0m\n\n  Executed 1 tasks and 1 outputs:\n    Tasks:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n    Outputs:\n      Succeeded: 1\n      Skipped: 0\n      Failed: 0\n\nBundling outputs ...\nCleaning up ...\n\n============= SUMMARY =============\nExecuted 1 SED documents:\n  SED documents (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Tasks (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n  Outputs (1):\n    Succeeded: 1\n    Skipped: 0\n    Failed: 0\n\n\n\u001b[0;36m====================================== Saving contents of COMBINE/OMEX archive ======================================\u001b[0m\nArchive:  archive.omex\n  inflating: contents/readme.html    \n  inflating: contents/hh200x50-LEV01.ode  \n  inflating: contents/huang-LEV.pdf  \n  inflating: contents/hh200x50-LEV01.sedml  \n  inflating: contents/metadata.rdf   \n  inflating: contents/Figure10a01.JPG  \n  inflating: contents/Figure10a02.JPG  \n  inflating: contents/manifest.xml   \nCompleted 29.0 KiB/1.7 MiB (478.1 KiB/s) with 8 file(s) remaining\rupload: contents/Figure10a02.JPG to s3://files.biosimulations.org/simulations/621d42a7d8a14a834cbf3df0/contents/Figure10a02.JPG\nCompleted 29.0 KiB/1.7 MiB (478.1 KiB/s) with 7 file(s) remaining\rCompleted 285.0 KiB/1.7 MiB (3.0 MiB/s) with 7 file(s) remaining \rCompleted 541.0 KiB/1.7 MiB (5.4 MiB/s) with 7 file(s) remaining \rCompleted 797.0 KiB/1.7 MiB (7.8 MiB/s) with 7 file(s) remaining \rCompleted 799.8 KiB/1.7 MiB (7.7 MiB/s) with 7 file(s) remaining \rupload: contents/hh200x50-LEV01.ode to s3://files.biosimulations.org/simulations/621d42a7d8a14a834cbf3df0/contents/hh200x50-LEV01.ode\nCompleted 799.8 KiB/1.7 MiB (7.7 MiB/s) with 6 file(s) remaining\rCompleted 1.0 MiB/1.7 MiB (9.9 MiB/s) with 6 file(s) remaining  \rCompleted 1.3 MiB/1.7 MiB (12.1 MiB/s) with 6 file(s) remaining \rCompleted 1.3 MiB/1.7 MiB (10.6 MiB/s) with 6 file(s) remaining \rupload: contents/manifest.xml to s3://files.biosimulations.org/simulations/621d42a7d8a14a834cbf3df0/contents/manifest.xml\nCompleted 1.3 MiB/1.7 MiB (10.6 MiB/s) with 5 file(s) remaining\rCompleted 1.3 MiB/1.7 MiB (10.6 MiB/s) with 5 file(s) remaining\rupload: contents/Figure10a01.JPG to s3://files.biosimulations.org/simulations/621d42a7d8a14a834cbf3df0/contents/Figure10a01.JPG\nCompleted 1.3 MiB/1.7 MiB (10.6 MiB/s) with 4 file(s) remaining\rCompleted 1.5 MiB/1.7 MiB (10.5 MiB/s) with 4 file(s) remaining\rupload: contents/metadata.rdf to s3://files.biosimulations.org/simulations/621d42a7d8a14a834cbf3df0/contents/metadata.rdf\nCompleted 1.5 MiB/1.7 MiB (10.5 MiB/s) with 3 file(s) remaining\rCompleted 1.5 MiB/1.7 MiB (8.8 MiB/s) with 3 file(s) remaining \rupload: contents/readme.html to s3://files.biosimulations.org/simulations/621d42a7d8a14a834cbf3df0/contents/readme.html\nCompleted 1.5 MiB/1.7 MiB (8.8 MiB/s) with 2 file(s) remaining\rCompleted 1.5 MiB/1.7 MiB (8.9 MiB/s) with 2 file(s) remaining\rupload: contents/hh200x50-LEV01.sedml to s3://files.biosimulations.org/simulations/621d42a7d8a14a834cbf3df0/contents/hh200x50-LEV01.sedml\nCompleted 1.5 MiB/1.7 MiB (8.9 MiB/s) with 1 file(s) remaining\rCompleted 1.7 MiB/1.7 MiB (8.8 MiB/s) with 1 file(s) remaining\rupload: contents/huang-LEV.pdf to s3://files.biosimulations.org/simulations/621d42a7d8a14a834cbf3df0/contents/huang-LEV.pdf\n\n\u001b[0;36m=================================================== Saving results ==================================================\u001b[0m\ncreating group /hh200x50-LEV01.sedml\ncreating dataset /hh200x50-LEV01.sedml/report, shape: (1751, 1001), type: float64\ndataset created, uuid: d-cfe253a5-0a1c6f59-6cd1-13d5ee-2f5dfd, chunk_size: (440, 504)\ncreating attribute combineArchiveLocation in /hh200x50-LEV01.sedml\ncreating attribute uri in /hh200x50-LEV01.sedml\ncreating attribute _type in /hh200x50-LEV01.sedml/report\ncreating attribute sedmlDataSetDataTypes in /hh200x50-LEV01.sedml/report\ncreating attribute sedmlDataSetIds in /hh200x50-LEV01.sedml/report\ncreating attribute sedmlDataSetLabels in /hh200x50-LEV01.sedml/report\ncreating attribute sedmlDataSetNames in /hh200x50-LEV01.sedml/report\ncreating attribute sedmlDataSetShapes in /hh200x50-LEV01.sedml/report\ncreating attribute sedmlId in /hh200x50-LEV01.sedml/report\ncreating attribute sedmlName in /hh200x50-LEV01.sedml/report\ncreating attribute uri in /hh200x50-LEV01.sedml/report\ncreate_links: /\ngot link: hh200x50-LEV01.sedml\ncreate_links: /hh200x50-LEV01.sedml\ngot link: report\nwrite_dataset src: /hh200x50-LEV01.sedml/report to tgt: /hh200x50-LEV01.sedml/report, shape: (1751, 1001), type: float64\niterating over chunks for /hh200x50-LEV01.sedml/report\nwriting dataset data for slice: (slice(0, 440, 1), slice(0, 504, 1))\nwriting dataset data for slice: (slice(0, 440, 1), slice(504, 1001, 1))\nwriting dataset data for slice: (slice(440, 880, 1), slice(0, 504, 1))\nwriting dataset data for slice: (slice(440, 880, 1), slice(504, 1001, 1))\nwriting dataset data for slice: (slice(880, 1320, 1), slice(0, 504, 1))\nwriting dataset data for slice: (slice(880, 1320, 1), slice(504, 1001, 1))\nwriting dataset data for slice: (slice(1320, 1751, 1), slice(0, 504, 1))\nwriting dataset data for slice: (slice(1320, 1751, 1), slice(504, 1001, 1))\ndone with dataload for /hh200x50-LEV01.sedml/report\nload_file complete\nFile outputs/reports.h5 uploaded to domain: /results/621d42a7d8a14a834cbf3df0\n\n\u001b[0;36m================================================== Zipping outputs ==================================================\u001b[0m\n  adding: outputs/ (stored 0%)\n  adding: outputs/log.yml (deflated 94%)\n  adding: outputs/reports.h5 (deflated 3%)\n  adding: rawLog.txt (deflated 78%)\n\n\u001b[0;36m=================================================== Saving outputs 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(43.6 MiB/s) with 1 file(s) remaining \rCompleted 9.8 MiB/11.7 MiB (44.6 MiB/s) with 1 file(s) remaining \rCompleted 10.0 MiB/11.7 MiB (45.5 MiB/s) with 1 file(s) remaining\rCompleted 10.2 MiB/11.7 MiB (46.4 MiB/s) with 1 file(s) remaining\rCompleted 10.5 MiB/11.7 MiB (47.3 MiB/s) with 1 file(s) remaining\rCompleted 10.8 MiB/11.7 MiB (48.2 MiB/s) with 1 file(s) remaining\rCompleted 11.0 MiB/11.7 MiB (49.1 MiB/s) with 1 file(s) remaining\rCompleted 11.2 MiB/11.7 MiB (50.0 MiB/s) with 1 file(s) remaining\rCompleted 11.5 MiB/11.7 MiB (50.9 MiB/s) with 1 file(s) remaining\rCompleted 11.7 MiB/11.7 MiB (43.7 MiB/s) with 1 file(s) remaining\rupload: outputs/reports.h5 to s3://files.biosimulations.org/simulations/621d42a7d8a14a834cbf3df0/outputs/reports.h5\nCompleted 84.7 KiB/84.7 KiB (878.4 KiB/s) with 1 file(s) remaining\rupload: outputs/log.yml to s3://files.biosimulations.org/simulations/621d42a7d8a14a834cbf3df0/outputs/log.yml\n\n\u001b[0;36m=========================================== Post-processing simulation run ==========================================\u001b[0m\n\u001b[0;32mProcess the manifest file in the COMBINE archive ... succeeded.\nRead the manifest and post the files to the API ... succeeded.\nCreate thumbnails from the images specified in the manifest ... succeeded.\nPost thumbnails to the API ... succeeded.\nProcess and upload the outputs of the simulation run ... succeeded.\nRetrieve the logs of the simulation run ... succeeded.\nPost the logs to the API ... succeeded.\nProcess the SED-ML file in the COMBINE archive ... succeeded.\nPost the SED-ML file to the API ... succeeded.\nProcess the metadata in the COMBINE archive ... succeeded.\nPost the metadata to the API ... succeeded.\u001b[0m\n\u001b[0;36m================================ Run complete. Thank you for using runBioSimulations! ===============================\u001b[0m","skipReason":null,"exception":null,"status":"SUCCEEDED"}